dcaf13 (dcaf13)


Basic Information

Item Value
gene id dcaf13
gene name dcaf13
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19491155 ~ 19497727 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261245.1
CATTAATGCGCGTTACGTCATACAAACGCATGGTCCAGCGTTTCTCTGAACGCTGAAGATTTGATCAGGATTTTAtttggtgtttatttttataatccgCTGGGATGAAAGTTAAAGTGCTTTGCAGAAACCCGGACGATTATGTTCGAGAGACGACCAGAGATATACATCGAGTGCCGAGGAATTACGATCCGACCCTGCATCCTTTTGATGTGCCCAGAGAATACACGAGGGCCCTAAATGCCACTAAACTTGAGAAGGTGTTTGCCAAACCCTTTATAGCTTCACTAGACGGGCACAGAGATGGCATCAGCTGCATCACCAAACACGCCAAAAGCCTGTCAACAATCATCTCTGGTGCTTGCGACGGGGAGGTGAAAGTGTGGAACCTTGCTAAGCGGGAGTGCTTGAGGACAGTTCAGGCTCATGAAGGATTTGTACGAGGAATCTGTTCCCGCTTTTTCGGCACTTCCTTTTTCACGGTAGGGAATGACAAGACCATCAAACAGTGGAACATGGAGGCACCGGGATATGGAGTTCGGGAGGAACCGATTAACACGATTCTGGGGAAGGCGGTGTTCACAGGCATTGACCACCACCAGAGGGAGGGCACGTTCGTAACCTGCGGACAGACGGTGGATATCTGGGATGAGCAGAGAAGCAGTCCCATCCGCTCCTTCAGATGGGGTGTGGACAGCTTCAACTGCGTCCGATACAACCCCATAGAGACCGATCTTCTCGCCAGCTGCGCTTCAGACAGAAGTATCGTCTTGTATGACACCAGAGAATCTGCACCTCTTAGAAAGGTTATCATGCAACTGAGAAGCAATACGCTTTGCTGGAACCCAATGGAAGCATATTATTTTACCTGCGCCAATGAAGACTATAACCTCTACACTTACGATATAAGGAACCTGGATATTCCTGTGATTGTGCACATGGATCATGTATCAGCTGTGCTGGATGTGGATTATTCACCTACGGGGAGGGAGTTCGTATCTGCCAGCTTTGACAAAACGGTCAGAATCTTTCCGAAAGACAAAGGTCACAGCAGGGAAGTATACCACACCAAACGTATGCAGCATGTCATCTGTGTGAGATGGTCTGCCGACAACAAATATGTCCTGAGCGGCTCTGACGAGATGAACATTCGACTGTGGAAGGCCAAGGCCTCGGAGAAGCTTGGACTGCtctctgcccgagaaaaagcaGCCGCAAACTACAACAAGAAGCTGATCGAGAAATTTCAGCACCATCCACAAGTGAAACGCATCGCCCGTCACCGCCACCTGCCCAGAGACGTCCTGAAGCAGAAGAGACAGCTGCATGAAATGAAGGAAGCTCAGCGCAGAAAggAACTAAATGTCCTCAAACACAGCAAGCCGGGATCTGTTCCTCTGctgacagaaaaggagaaacACGTGGTTGCTGTTGTGGAGTAAGAGCTGATTTAAAGAGCTTCCTTCGGTGGAGGGTTTTCTTCACACACGGACACGCTCTAAAATATTCCACCCTTTGGCCTCTATTGTACTTCCATGCTAAAGATTGAGTGTATACAAGAACCGTTAGCATACTACCATTTCCTACGCATTTCTAAAGAATTTTTTCATGGACAAACTGCGCTCTCAATTGTTGTATATGACTATAAGAACATATTTTGAGAATCCAACCTTCACTGCAAACCTATTGTGTTACACAATGGCACGTGTAAGTGAACCGGACTGTTCCAGATGTTTCTGCAACATAAAGGTACTAGTGAGTGTTACCATCACCTGTATCTCTAAATCAGCATGGAGCAAGGTTACCTTGTAGGTGTTCTTACTGATGTTATATGGGCCATATATTGTCGGGCAGTGAACTGCAATAAATGCAACGTAAGATTGGTGA

Function

symbol description
dcaf13 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex and small-subunit processome. Predicted to be active in nucleolus. Orthologous to human DCAF13 (DDB1 and CUL4 associated factor 13).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K11806 DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261245.1 True 1887 mRNA 0.47 11 19491155 19497727

Neighbor

gene id symbol gene type direction distance location
LOC122360535 LOC107728462,LOC107666770,LOC107592443 coding upstream 3363 19483949 ~ 19487792 (+)
zmp:0000000951 LOC107592442,LOC107728471,LOC107666810,LOC107709755,LOC107556960,LOC107666812 coding upstream 7265 19480366 ~ 19483890 (+)
arhgap33 arhgap33,LOC107728480,LOC107666809,LOC107709693,LOC107686565 coding upstream 16057 19427483 ~ 19475098 (+)
rbm42 rbm42,LOC107709618,LOC107728490,LOC107666869 coding upstream 63924 19422401 ~ 19427231 (+)
ncam3 LOC107666890,LOC107686492,LOC107709588,LOC107728453,LOC107556979 coding upstream 74016 19406080 ~ 19417139 (+)
rims2a rims2,rims2a,LOC107666746,LOC107728483,LOC108438094,LOC106919946,LOC106962152,LOC107556969,LOC107095553,LOC108256727 coding downstream 1554 19499281 ~ 19643486 (+)
zfpm2a zfpm2,zfpm2a,LOC107592441,LOC107719156,LOC107556951,LOC107666743,LOC107714317 coding downstream 228429 19726156 ~ 19865094 (+)
oxr1a oxr1a,LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding downstream 400059 19897786 ~ 20012359 (+)
zmp:0000000930 zmp:0000000930,LOC107719165,LOC107666769,LOC107592532,LOC107686330,LOC107714340,LOC107556967 coding downstream 536405 20034132 ~ 20036138 (+)
psma2a psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697 coding downstream 543809 20041536 ~ 20044792 (+)
G114379 NA non-coding upstream 181941 19308264 ~ 19309214 (+)
G114345 NA non-coding upstream 242835 19245933 ~ 19248320 (+)
G114354 NA non-coding upstream 285191 19202394 ~ 19205964 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding upstream 335088 19095730 ~ 19156067 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding upstream 378428 19068602 ~ 19112727 (+)
G114520 dpys,LOC107728457,LOC107686378,LOC107666745 non-coding downstream 150177 19647904 ~ 19648864 (+)
G114556 NA non-coding downstream 181656 19679383 ~ 19679686 (+)
G114558 NA non-coding downstream 184413 19682140 ~ 19682452 (+)
LOC122360931 NA non-coding downstream 204998 19702725 ~ 19719929 (+)
LOC122360959 NA non-coding downstream 511826 20009553 ~ 20010093 (+)
G114382 NA other upstream 162392 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 198274 19283761 ~ 19292881 (+)
fxyd11 NA other upstream 207640 19280383 ~ 19283515 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other upstream 238109 19197804 ~ 19253046 (+)
LOC122360132 NA other upstream 649571 18827254 ~ 18841584 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 146102 19643829 ~ 19647806 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other downstream 721917 20219644 ~ 20227077 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 769814 20267541 ~ 20304684 (+)
siglec15l NA other downstream 1269551 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 2352262 21849989 ~ 21872972 (+)

Expression


Co-expression Network