cmtm6 (LOC107717369,LOC107600546,LOC107666873,LOC107668282,LOC107713799)


Basic Information

Item Value
gene id cmtm6
gene name LOC107717369,LOC107600546,LOC107666873,LOC107668282,LOC107713799
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20778080 ~ 20784441 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261440.1
gcaaaaaaaaatcccaataaCACACTTCTGTCGTAAACTTCAGCGAGCTCCGTAGGAAGTCCTCCCTCATTGAAGAAAGCTGATGGGAGTGCGGAAGTGAAACACAAAGGACGCGTGAACGGCATAAACAGAGCGCATTATAACAACCGCCCGAGATTTAGCTACAATACAGCATGGCCACCGCGGACACGGTGTACAACACCACGACGACGGCGCAGGAGCCCAAATCCAGAAAATGGATCATCGTGCCTTCAGAGAACCTTGACAAAGTTAGACTCTTCATAAAAGTGCTTGAAGTGCTCCTTTCGTTTGTGGCTTTTGTGATGGAGGAGATCGTGTCCAACTGTTCACAATGCGGACCACTctatttttttgaatttgtCAGTTGCACAGCCTTCCTCTTCACATTGCtgctcctcatcctcctggccaCGCCGTTGCACCAGAGAGTTGGAATTAACAGCTGGCCTGCTCTGgattttttttatacgGCAATCATGGCAATCCTGTTCCTCCTTGCCAGCATCGTGTTTGCAGCAGACAATGGTCAGACAGATCTGGAGCGGGGCGCAGTGGCATTTGGCTTTATGGCTACGGTGGTCTTCTTTATTGACTCTGCTTTGATCATAAAAAAGCGTGGTTTTCCTTGCCGAAAGGGAAACAATGAACAAGCAGAGCGCGCGCCCAGACCAGAGAGTGAGAAACTTAATGCTAATGGAACTGACTCGGTAAACTGAAGCATTTTGCCCGCATATTCAAAAGCTTTTCCCAGTCGTCCAACAATTTTTATacatgagaaatgtttttacccaaagtgcaaaaaaaaacaaaacaaaaatttttaacatttccacTTCAGTCAGTTACTAACTGGCGAGCTGAACCAGTTTTATACTGTGCctggatttatttttgtaatatttttttaataagtactAATTTTACAAGTAGAAAGCATTCCTTCGTAGGGATTCGTCTGTGTGGGGATCGTTTTATTTTGCCATTACTATTTTCACACGGATATCCTTTTGTAAAGCAAACTAAACATATTTTGACCGTATACTTTTGTATGACTAcgcaaaaaaaagtcattccaTCTTTATTAAAGTGTATGTGCTGCACATTTTCTGTACAAAAACATGCGCCGTATTTCTTAAAAACGTGCTAATCccttttgtttttatggttaTATATGCATTCCTGAAATAATATATGATTGATCGTGTTGACAGTAATTATTTATCTCCTGTTTTGGATATATTGGATAAGaagtcatgattttttttaaacacttgcaCTGTATacacaaatgtcattaaatTACTGTAGAGATGTTGAGTGAGCTGTCGAAATGAGTGAGGTGACAGCGCGATGAAGATGTTATGGCCCTGTGATTATCATGTTTTGCTGTGCAAGGGACGTCAGGGGTGTACAGTCGgagatattttttctttctcctatTGAAATGCCTTTTTTGTATTGAGTGGAACCGGAAATGTTGtatatttcttttgtgctttatcTTGTTCCATGTGAGCCcagattgtgtttttgtgagcgCGTTGAATCTAATGAAAGTTTAGTAACCTGACATATATTTGCCTTTATCTGGAGGAACGTGCGTTTAGGCccaaatgtgtttgtttaaatgccCGCGGAGATGAATGGACTGCAAGTTTCTTGAGACACTAATCTGCCTTACGCTTCCACCTTCCTGTGCTGTACAACTGACTGctgctttctgtgtgaataGCATTGTGTTTATAAATCCTGATATTGTGTTGACGCTTTAGGATAAGCCACTTTCTCGTTAATCTTAAAATGTGGATCAATCATCTGGGAGGATTAATTATTGCTAAGgattttgatgatttttaagATTAAAGGTCTAGCGGGTCTGTTTGAATACCAGCAGAGTTTCTACAAAAGGTTGCATGGaacattttgcagaaatgctTTTGTAAACATCTCTCCATTCCAgttaagcaataaataaatggctcCTGGGCTCTGAA

Function

NR:

description
PREDICTED: CKLF-like MARVEL transmembrane domain-containing protein 6

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261440.1 True 2015 mRNA 0.40 5 20778080 20784441

Neighbor

gene id symbol gene type direction distance location
cmtm7 cmtm7,LOC107666776,LOC107717357,LOC107668286,LOC107600545,LOC107592881,LOC107713818 coding upstream 3702 20770464 ~ 20774378 (+)
LOC122361050 LOC107717367,LOC107666876 coding upstream 13733 20759368 ~ 20764347 (+)
rpp25l rpp25l,LOC107666877,LOC107600503,LOC107717368,LOC107713839,LOC107592013,LOC107668321 coding upstream 18848 20756995 ~ 20759232 (+)
LOC122360694 NA coding upstream 22714 20751773 ~ 20755366 (+)
LOC122360859 LOC107668277,LOC107592573,LOC107713820 coding upstream 26765 20747331 ~ 20751315 (+)
ptpn23a ptpn23a,ptpn23,LOC107666802,LOC107717372,LOC107668297 coding downstream 322646 21107087 ~ 21117690 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107717377,LOC107666889,LOC107668317,LOC107713815 coding downstream 363316 21147757 ~ 21157049 (+)
si:dkey-22o22.2 si:dkey-22o22.2,LOC107666790,LOC107717379,LOC107668308,LOC107592533,LOC107713796,LOC107600533,LOC108437325,LOC108272818 coding downstream 426411 21210852 ~ 21314454 (+)
ndufaf6 ndufaf6,LOC107717382,LOC107591959 coding downstream 562216 21346657 ~ 21354616 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 coding downstream 580898 21365339 ~ 21378842 (+)
G114826 NA non-coding upstream 139440 20637446 ~ 20638640 (+)
G114813 NA non-coding upstream 191253 20586060 ~ 20586827 (+)
LOC122360972 NA non-coding upstream 355891 20414210 ~ 20422189 (+)
G114707 NA non-coding upstream 364191 20413557 ~ 20413889 (+)
LOC122359979 NA non-coding upstream 535536 20234998 ~ 20242544 (+)
LOC122360417 NA non-coding downstream 144261 20928702 ~ 20929441 (+)
G114978 NA non-coding downstream 333708 21118149 ~ 21120532 (+)
LOC122360615 scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836 non-coding downstream 344687 21129128 ~ 21132105 (+)
trnae-cuc_37 NA non-coding downstream 354440 21138881 ~ 21138952 (+)
G114983 NA non-coding downstream 356601 21141042 ~ 21142030 (+)
siglec15l NA other upstream 7688 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 473396 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 551003 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 1130274 19643829 ~ 19647806 (+)
G114382 NA other upstream 1449317 19327104 ~ 19328763 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 1065548 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 1099468 21883909 ~ 21921531 (+)
G115193 NA other downstream 1192676 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 2125094 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 2180128 22964569 ~ 22975774 (+)

Expression


Co-expression Network