gpd1l (gpd1l,LOC107600618,LOC107705153,LOC107666803,LOC107551192,LOC107713825,LOC108434205,LOC103034694)


Basic Information

Item Value
gene id gpd1l
gene name gpd1l,LOC107600618,LOC107705153,LOC107666803,LOC107551192,LOC107713825,LOC108434205,LOC103034694
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21962220 ~ 21968547 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261480.1
GTCAAAAGTCGACCGACACGTTACCTCCCACCGACTAACTGCTTGactttatagtattattatctGTATTGTTTACTTGAAACTCTTATTCACTTGTGGAAAGCGAAAGTGGTTATGGCTGCTCCGCTGAAAGTATGTATTGTTGGTTCAGGAAACTGGGGCTCTGCAATTGCAAGAATTATTGGCACCAATGCACAGAAACTCCAGCGCTTTGCCACCACAGTCAAGATGTGGGTTTATGAAGAAATGGTCAACGAGAAAAAGCTCTCTGAGATTATCAACACCGAACACGAGAATGTCAAATACCTTCCAGGCTATAAACTCCCAGAGAACGTGGTTGCGGTGCCGCAGCTTCGGGAAGCTGCAGAAGGTGCTGACCTACTGGTGTTCGTTGTCCCTCATCAGTTTATCCGGAAACTGTGCGATGAGATGGTGGGCTGTGTTTCGGATAAGGCTCGTGGAATTACATTAATCAAAGGCATTGATGAAGGACCAGAAGGATTGAAGCTCATCTCCGATATAATTCGGGAAAAAATGGGCATCGATGTCAGTGTCCTGATGGGCGCCAACATTGCCAACGAAGTGGCAGCTGAGAAGTTCTGTGAGAGCACCATTGGCAGCAAGGTGTTGGAGAACGGCATCTTGTTCAAAGAGCTCCTGCAGACCCCTAACTTCAGAATCACTGTGGTGGATGATGCTGACACAGTAGAGCTCTGTGGAGCCCTCAAGGCACTTTGATTTAGAACATTGTTGCTGTGGGTTGCTGTGGGCGCAGGCTTCTGCGATGGTCTGCGGTGTGGAGACAACACCAAAGCAGCTGTCATTCGACTGGGATTGATGGAGATGATCGCCTTCGCCAAACTCTTCAGCAAAGACGATTCCGTATCCTCTGCCACATTCCTCGAGAGCTGCGGCGTGGCTGACCTCATCACTACCTGCTACGGTGGAAGAAACCGGCGCGTGGCTGAAGCTTTTGCCAGGACAGGGAAGagcATCGAGGAACTGGAGAAGGAGATGTTAAATGGACAAAAGCTTCAGGGACCATTGACTTCTGCTGAGGTTTATCATATTCTCAAACAGAAGGGCCTAGTGGATAAGTTCCCACTGTTCACGGCTGTTTATCAGATCTGTTTCGAGGACAAACCAGTTCAGGACATGATCACCTGCCTGCAGAGCCATCCGGAACACCTGTGAGAGTTCCTCTGTGTCCCCTTCTTCATCACCATCCTCTTCGTTCTGTTAGATGGTCCTACCtccaacatttctcattttcttcatTAATAAGTTCTCTTTTTGTCCCAGGTCCAACTCTACACTAATGGTTAGGCTTGAACTCAGGGGTTTGTTTCCAACCCAGCAGGTTTTGTGGCTAATGTGCTCgaaatgatttttcagaaaaGCCATGTGTTTGAGCCTACATGGCATTTTtaactctttttctctctgtctgactGCCCTCTTGTGGATGGCCCACAATATCACCTCACTGACAGAGATGAAATGCCTCTTTTTAAATGACGGTGGAGACCTCATCATAGAGGCTCACTACACGTCCATATTGAGAGCAACATGACACGACTGCAATGCCTCCGTTACAATCTTTACGATCCTGTAGAACCAGCATAATACCAGTTTTTATAGTTACGCTTCATTTAAACTAGGTTTAACACGCTTTATTTCCGTTGTAATTGCTTAGTTTAATgctgataaatatttaaactgccATTTACACTGAACTTTTTGATAGATTAAGTAAAACTTAGATTTCTGTGAAGATGCCTTTTAACTCCTCACTGGTCAGGAACAGCTGTCGCAGGTCAACGAATACTTGAATggaagttttgttttgttttaaaggacAGTATATTCTATAAAAGGGGCTTAAATCGGTCACCTCAGTTTCCCAGCAGCCCCCTTTTAAGACCAAGTGCTTTCAAGACAGGGAACATAAAACGTGTTATAGAATGACATAGTTGTCTTTACTTTTTATCatgttacagtaaaaactaCAGTGTTGCATATCTAAATTTCAAGAATGCATTGAAAACACAAATTATTGAATCCCTAAATAGTAACTACTTTAGCATCCTGATCAACTACCATATCTACAGTTCCAGTTGTAATAACTTTATGAAGATTAGCATTCAAATACTAAtgtaatctttatttatacCATGAAAAAAAGTAGTATTAAGATCTGTGATTTTCAAATGAAGGAGCGTTTTACAGGAGCAGCTAGTGTTTGGATCTATAATGGccttctgtttttgtttttttttcaaggctAGCTCTTAGCATGTATCTGTTACAGTgtcatttctgttgtttttattattttcagtgtttatgtAAGAGTTTAATTCATACTACAAGTATTCAGCTGTGGAAATGTTGAAGTGTACCAAGTCTAACACTCCAGTAGATAAACTATATACGTTTTCATGTTGCTATATGAATCCGtcctgggttttttttcctgagaatGTGATCATTTTTGCAAGTTGCGTGTCTAACAAATGTCAACAAGGCTGAACGTTGAAACAAATGCTGCTTTTGAAAGTAACCAATAAAATAATCTGtgctaaa

Function

symbol description
gpd1l Predicted to enable NAD binding activity; glycerol-3-phosphate dehydrogenase [NAD+] activity; and protein homodimerization activity. Predicted to act upstream of or within carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be located in cytoplasm. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Brugada syndrome 2. Orthologous to human GPD1L (glycerol-3-phosphate dehydrogenase 1 like).

NR:

description
glycerol-3-phosphate dehydrogenase 1-like protein

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261480.1 True 2586 mRNA 0.42 8 21962220 21968547

Neighbor

gene id symbol gene type direction distance location
rbms3 rbms3,LOC107730162,LOC107668303,LOC107713827,LOC108434201 coding upstream 139747 21703724 ~ 21822473 (+)
si:dkey-29b11.3 LOC107730210,LOC107600552,LOC107668293,LOC107713830,LOC107567766,LOC107668280 coding upstream 308161 21651508 ~ 21654059 (+)
LOC122360960 NA coding upstream 556396 21392842 ~ 21405824 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 coding upstream 583378 21365339 ~ 21378842 (+)
ndufaf6 ndufaf6,LOC107717382,LOC107591959 coding upstream 607604 21346657 ~ 21354616 (+)
tmem42a si:dkey-99n20.7,LOC107705805,LOC107666806,LOC107600663 coding downstream 2675 21971222 ~ 21972500 (+)
ebag9 ebag9,LOC107666870,LOC107705161,LOC107600620,LOC107679646,LOC107713822,LOC107551191 coding downstream 15343 21983890 ~ 21989916 (+)
gdf6a gdf6a,LOC107705204,LOC107600621,LOC107666829,LOC107551190,LOC107679643,LOC107713806 coding downstream 35688 22004235 ~ 22010159 (+)
LOC122360094 tmem74,LOC107705834,LOC107666858,LOC107713801,LOC107679640,LOC107551181,LOC107579295 coding downstream 168021 22136568 ~ 22139827 (+)
eif3ea eif3ea,LOC107755923,LOC107551184,LOC107679649,LOC107705216,LOC107666832,LOC108434212 coding downstream 252327 22220874 ~ 22258766 (+)
G115157 NA non-coding upstream 132689 21828216 ~ 21829531 (+)
G115134 NA non-coding upstream 267676 21693494 ~ 21694544 (+)
G115074 NA non-coding upstream 571058 21390781 ~ 21391162 (+)
G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding upstream 792867 21167994 ~ 21169353 (+)
G114983 NA non-coding upstream 820190 21141042 ~ 21142030 (+)
G115200 NA non-coding downstream 28463 21997010 ~ 22001617 (+)
G115288 NA non-coding downstream 558610 22527157 ~ 22530262 (+)
G115342 NA non-coding downstream 798954 22767501 ~ 22768460 (+)
G115401 NA non-coding downstream 1014514 22983061 ~ 22983700 (+)
LOC122359996 NA non-coding downstream 1030902 22999449 ~ 23003110 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other upstream 40689 21883909 ~ 21921531 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 89248 21849989 ~ 21872972 (+)
siglec15l NA other upstream 1191828 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 1657536 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 1735143 20219644 ~ 20227077 (+)
G115193 NA other downstream 8570 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 940988 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 996022 22964569 ~ 22975774 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other downstream 1141736 23110283 ~ 23116815 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 1196019 23164566 ~ 23169677 (+)

Expression


Co-expression Network