phc1 (LOC107672038,LOC107714597,LOC107724796,LOC107552845,LOC107587786,LOC107704919)


Basic Information

Item Value
gene id phc1
gene name LOC107672038,LOC107714597,LOC107724796,LOC107552845,LOC107587786,LOC107704919
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23234457 ~ 23243764 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261564.1
GGGGCGGGGTTTCATCGCTTTTTTTGAGCCTCATCACAATCACCGTTGTTTGAAGAATTCCAACAATacttacaaaagcaaaaaataaacactggaACTATATTACATCGATATCATAAGCACAGTGGACTCAGCGGTTCCTGCTGGTTGTTTCCATTACGAGAGAGAGAAGCAAAAACATTGACGATCGCAGAGAGTTTGATTGACTGGTCGTCCATCCAGTGAGCATGGAGGCAGGAGAAGACCAGGCCAACTCCAGCTCAACCAATAGCAATGCAGCGTCAGGGGGAAACTCCCGCCCCCCTCAGATAGCTCAAATGTCTCTGTATGAAAGGCAAGCCGTGCAGGCACTGCAGGCGTTACAGAGGCAGCCCAATGCAGCTCAGTACTTCCAGCAACTGATGCTGCAGCAGCAGATCAACAGCGCTCAACTTCATAACCTGGCTGCTGTGCAACAGGCAACTCTTGCAGCCAGTCGTCAGTCAAgctctcccagtaacagcgtctcTCAAGCCTCAAGTTCAGCGCAGTGCACAGTCAACTTAAGTACAACATCTGGTGGAGGGACCATGACAAACCCCCGTCCAGTGGGACCTGCCACCTCTGCTGCCTCAACAGCCCTTAGCCAGTCAGTTTTGTTGGGTGGAAACTCGGGTGGACAGGGTCAGATGTACCTGAGAGTAAACCGCTCTCTCAGGGCACCTCTCACCCCTCAGCTCATTTTCATGCCTGGTGGTACGGCCACAGCTGCAGTGGCAACGGTTGCCCAACAGCAGCCCCAGCAGCAaccccagcagcagcagcagcagcagcaacaacaggAAACGGCTCCCACGTCCTCAAGTAACCAGTCAGACAATGATCAGgTGCAGAATTTGGCAATGCGTTGCGTGTCCACTCCAAGGGTGGCTACTGTGAAGACAGAGTTTGCAGACAGGAAGGAGACAAGTGGCTCATTCCCTCTTAACCAACAATCTCAGACTCAGCAGCAGTTTGGTCAGGCAGCCCAGCAGATCCAACCACAGACCCAACCGCTCGCGAGCACCAAACTCCAAAACTGCTCCAACGCCACCAATTCCAACATGCCTGGCCTCAATGTGAAGGGCGCTAACCAATCCGCTGTCACCCCACAGCAAGCTGGAGGTTCCTCCAATCCTCCCTCCTCCTCGCCTTCCCCCTCGCTCCCTCTTTCCCAGCTCCTCCTTTCTCAATCTGGCTTGTGCCAAGCTCGAGGAGTACCAGCTGCAACAGCCACCGTTACCCACATCCTGGTGCCCACCTCCAATGTTCCTACATCTTCTCAAGGCTATTCGATGGGTACGGTGACAAACAAATCTAACATGACTGCCCAGACGTTAGTGGTGCAGCCCCTCCAGCAGACGGGGGCGAATCTTAGCACTGAAAAACTGGGTCATGGAACAGGGCATGTGCCCATTCAACCTAAAACGGCTCAGGGGCATAGGCTGCCAGTGCAGATGCCTCCTCGACACCCTCCTCCCATTCTTCCAGCACCACCCAACAATGGGCAGGCTGCGGGGGGCCATCACCCTCCTCACGTCCCAGTTCAGCTGGTCGGGGCGAGGCAAAGCACAGTAGGAAACTCCCAGGCTTTAGCAGTGGCCCAGGCTCGAACCTGTTGCGGCCAGCAGGACGCTACGGCTGTCGTACCTGTCAATAACTCTGGTAGCAATGTTGTTACAATGGTGACTGCTGTGGAAACAAGCGGAGCCGGCATGTGCCTTAAAACAGCCCAAAGTGCCCTCCCAATGTCTACCAATCAGAGCTCAGCATTGAGTCAGGGTAGTCCTGCTTCGGCCACACACTCGATGGATGGACAAAATAGCTCTGGAGATTCTGTTTTCGTTCAGTCTGGACCAGCTCAGACAAAGCCTGGGATCGGCCCGTTAAAACGGAAATCTGAGTCAGATTTACCCCATGAGATGGCAGCCGAGGCCGTCAATGCAAGTGCATCAATGCAAGACTCCGCTCCTCCTCTCTCACCAGCTCCCTCATTAGATACAGTTCCAGAGATGGCGTTCTCCTCTCCTcctactctctctctttctctccctctccctcgtGGAGGAGGACAGGGTGATCGAGCACCGGTGCCACAGGCTGTGGTCAAACCTCAGGTCCTCACTCACCTCATTGAGGGCTTTGTTATCCAGGAGGGAGCCGAACCTTTCCCTGTGACTGGGCCATTGAAAGAACCTGTGGCTGTTCCACCCATCCTACATCCAGAGAACATCCGCTCTGATAAATTGAAGTGTGAATACTGTTTAAGATTTGCACCGGCCAGCCAGTTCAGGCGATCAAAGCGCTTTTGTTCCAAAACCTGTGCCAAGAGGTACAATGTCAGCTGCAGTAACCATTACCGTGTTAGTAGAGGTCTTGAGGGCGTCGAACGGCCATCAGGGGGCCCTGTTGTGCAGGATGTTATTGCTAGACGCAGGGGTCCTCGCAGAAGCAGCTCTGAGATAGCCTGTGCTAAAATAACAGGCAGGCATCTTCCTGTAAAGTGTCGTTCAGAATCTAGCCGTTCTGAGGACATCTCCAGCTGTGAAGGCGAAGAAGAGGAAGACTTCTTGTCACTCTCTCCCAGCTCATCCTTCTCATGCCCAAGACCAACTCACTGTGGTCCTCAGTTAGATGGCACAGCACCAAGTGGCATCCCAGTGAATGAGAACCACTTCCTATCTGGCAACCCGGCTCACTGGAGTGTGGAGGAAGTGTGtcagttcatttcttctctTCAAGGTTGTGAGGACCTGGCATCCCAGTTCCTGTCACAGGAGATCGACGGCCAAGCGCTCATGCTACTAAAGGAAGAGCATCTTATGTCCACCATGAACATCAAACTCGGTCCTGCCCTCAAAATCTGTGCTTCTATCAACAGCCTAAAGGATTGAACAAAGCATGGCGAGAGAGAAGTAGCAGGATCAGAGCTTTATACTTCTGTCACCAGCCTGAGAAACTGAAACTGACGGGCATGAAAAGACATTGGATTTTATACTGACATAGAgattaatccaaaaaaaaacaggaatgaATGACATAACATTTGAAGGGGAAAACAAGTGAGGCCTTATTAAAGCAAATTATTTACCTTAGTGTTTGTTTAGATGTGAAAGTCTGaattattaatgatatttttcAGTGATGGCTAGATTGGAACTGACTAGTTCTCGCTTTAATTGGTCCTGTTTCCAAACAGTTCTGAAAAGAATAATGGGAGTGATCCTAAAGGAAAGAAATAGCACAAAGATAATAATCTATAATCTTTCAATGACGGAATCGATTTAATTAGGAGGTGATAATGCATAATACATTTCGATTCTGCATTTTGAATGTGCTACCTATATAATATCTGGGCTGTTTGAATGGGCATGTGAGCTTCGTATCTCTGATTTGAAGCAGTCACTGTAAATGTGTAGTCCTTTTGTGTTTGTCAGTTACGTTAAAAAATAGTAATCAAAGTATGACTGATAATGCCATTAGAGACAGTAATCAATGTTATACCTGTAGTGCTTTTGACTATCAGAGTCAAAGATATATGAATAAGTTgccttttctaaaaacaaagcaGTTTGTCGACTCTGACAGCTGCATCTTCCTTCAAAACCTCCCGTACTTTtctcaaaaaaagtcaaattgagTGTCATTTCACTACTTGTTTGGAAAGCctgttgttttcagtttatCAGCACTTGATTAAGGGACTGTTGATTGTATTTAGTGTGCCACTTAGGAAGTTAATACAATTGGATTCCTATACACTATATAACGTTCTGCTATGAATCTACAGAAATGGTCATTGCAGCCGTTGATGATTTCATACGTCAACTTTGCATTCCCGTTTCACTGCTATCAGCGGTTCAGAGACTGTGAGAAATGGAAAATCTGTAGTTATGTTCTCACTACACAGTATTACTGAATGGAAGtaggttttgtttctttttataaatcACAGACTGAAGGAGTATTTGGGTAACCAATCCTAGAACAatacgttttctttttttgtttctacaATAGATGGTTAGGAAACTTTTCATTTGTATTGAAAAGTAGCGTAATTATTTTTGGGTACAGTTTACCGGCTTCATAGACAAGTATTAGTAGCTTTACTTGAGAGTCTTGCAGCACCGTTATGATGAGGTAGTGTGTAAATGTTtatgagagaatgagagagccTAAGAAAGCTGTTTGCTGGCACTCTAAAAGTATGGCTGAGTTTCTTTGTAtgctaaaatatgaataaagaaGGTGCTGTGACATTCA

Function

NR:

description
PREDICTED: polyhomeotic-like protein 1 isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11456 PHC1, EDR1; polyhomeotic-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261564.1 True 4284 mRNA 0.48 15 23234457 23243764

Neighbor

gene id symbol gene type direction distance location
atn1 LOC107714603,LOC107587791,LOC107704916 coding upstream 36735 23185028 ~ 23197722 (+)
mlf2 mlf2,LOC107671951,LOC107704913,LOC107724787,LOC107714604 coding upstream 53028 23176824 ~ 23181429 (+)
LOC122360866 phactr4b,LOC107587745,LOC107597106,LOC107700669 coding upstream 181397 23030988 ~ 23053060 (+)
LOC122360864 LOC107732827,LOC107587847,LOC107704842,LOC107700682,LOC107756122,LOC107597135 coding upstream 225998 23004912 ~ 23008459 (+)
LOC122359865 LOC107700662,LOC107556081 coding upstream 300475 22930421 ~ 22933982 (+)
mboat7 mboat7,LOC107587783,LOC107716833,LOC107711731,LOC107700769,LOC107552840,LOC107704925 coding downstream 23746 23267510 ~ 23273792 (+)
tmc4 tmc4,LOC107711726,LOC107700770,LOC107552843,LOC107579598 coding downstream 30162 23273926 ~ 23281694 (+)
leng1 leng1,LOC107552839,LOC107716812,LOC107587899,LOC107704929,LOC107711733,LOC107700768 coding downstream 38054 23281818 ~ 23284256 (+)
lmtk3 LOC107716834,LOC107704931,LOC107587782,LOC107711732,LOC107700767 coding downstream 41279 23285043 ~ 23300830 (+)
prpf31 prpf31,LOC107700766,LOC107552837,LOC107711734,LOC107704928,LOC107587780,LOC107716835 coding downstream 57503 23301267 ~ 23306068 (+)
G115422 NA non-coding upstream 90999 23141073 ~ 23143458 (+)
G115420 NA non-coding upstream 125424 23108123 ~ 23109033 (+)
G115416 NA non-coding upstream 139047 23091343 ~ 23095410 (+)
G115371 NA non-coding upstream 156581 23052420 ~ 23077876 (+)
G115384 NA non-coding upstream 224622 23008604 ~ 23009835 (+)
G115462 NA non-coding downstream 21708 23265472 ~ 23266469 (+)
G115706 faxcb,LOC107587769,LOC107704942,LOC107716849,LOC107700756,LOC107711729,LOC107552822 non-coding downstream 291716 23535480 ~ 23559924 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding downstream 311857 23555621 ~ 23568054 (+)
G115718 NA non-coding downstream 329209 23572973 ~ 23576648 (+)
G115730 NA non-coding downstream 421502 23665266 ~ 23677259 (+)
rps9 rps9,LOC107587787 other upstream 10529 23222050 ~ 23223928 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other upstream 64780 23164566 ~ 23169677 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other upstream 117642 23110283 ~ 23116815 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other upstream 258683 22964569 ~ 22975774 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other upstream 318980 22909535 ~ 22915477 (+)
G115449 NA other downstream 7618 23251382 ~ 23254566 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other downstream 31225 23274989 ~ 23358779 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other downstream 365684 23609448 ~ 23612393 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other downstream 572160 23815924 ~ 23822446 (+)
LOC122360598 NA other downstream 1530055 24773819 ~ 24832618 (+)

Expression


Co-expression Network