snrnp48 (LOC107679653,LOC107551179,LOC107756216,LOC107600666)


Basic Information

Item Value
gene id snrnp48
gene name LOC107679653,LOC107551179,LOC107756216,LOC107600666
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22347650 ~ 22351043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261609.1
GTTACGTCATCTCGAAGCGCCGACGGACGCACGCGAAGGCAATCGCGTAACAACAAGCTTGTTTTTGAGGACTCCTGATGTAAAATGTGTGAAACATCTTTCTCGTTGGGTCTCCAGGAGCGCATGCAGAGTTTGCAGGAGCTCACGGATTTCACAGAGAGTTGTCAAGCAGAACTAAAGGGTTTGTTTGAGGCGCTGGGATGGAGTCAGGAATTAGATTCACAAACCGTTCAGATGGAAGTGTGTCCATATGATCCAAACCACACAGTCCCGCGGGACAGGATGGAGAAACACAAAGCATCCTGTCGGCTCAGTAAGATGGGATACTCGAAAGAGGAAAAGGCTGAAATGTTTGATCCTTCAGTGTTTTACGAGAACGCTAGCATTCCTTCGATTACCATTGACAAAGATACATTTCATCAAGTGATTCGGCAGACCCGGGAGAATGCCCCTCTTATGAAATCTACACCAAgtgaCACATCTACAGATCTCCCTGACGTCCCTCAGAATCATAAGCGGGCATTATGTGACCTCACTGTGGCTGACCGATTGGCCATCTATGATCATGTGATACAACAAGCCAGTCAGCAGAGTGCAAAGAGAGAACCCAACAACGAGGATCTTTATGTAGATCTTGTTGCAAAGCTTAAAAAAGGAGAAGAACAGAGTGGACCAAAGTCTCATCTGGAGGTCTTGGCTGAAATGAGGGACTACAGGAGGCGCAGACAGTCTTACAGAGCGAAAAATGTTCACATCACCAAGAAGTCTTACACTGAGGTAATTCGGGAGGTGATTGATATCCACTCTGGAGAACTAGGCAGGATTTGGCAGGAAGTGAAGGATGAGGAGGTCAAAGCGTCACAGCAGTCATCTCACAGAGGGGCATCTGAGAGGGGCCGCTCCGCATCCGTCGAGTCACGTGAGTCTCGTGTCAGCTCCCGAGACGAGCATGGGCACAAACGGCACCGCAAACACAGCCGTAGCCGCAGTCGTAGTCGCAAGCGTAGCCgggagaggaaaaacaaaaggagAGATTCAGGGTCTCCAGATGTGCAGAGACATcataagaaaaagaagaagaaaaataaatcttgaaGTCTTAATTTAACAAATCAGGAATCAATGTGTTTTGATTTCAGATATTCTGAGTTGCATCTGCGTTttctccatattttttttttatcggaTGGTATGCTACAATGAAAttgctataataaaaaaattacaaata

Function

NR:

description
uncharacterized protein LOC109901926 isoform X2

GO: NA

KEGG:

id description
K13156 SNRNP48; U11/U12 small nuclear ribonucleoprotein 48 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261609.1 True 1231 mRNA 0.46 9 22347650 22351043

Neighbor

gene id symbol gene type direction distance location
zgc:113232 zgc:113232,LOC107705846,LOC107666867,LOC107600626,LOC107756222,LOC108437324 coding downstream 3550 22335163 ~ 22344100 (-)
cd83 cd83,LOC107705228,LOC107666866 coding downstream 15616 22330179 ~ 22332034 (-)
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding downstream 139046 22179651 ~ 22208604 (-)
trhra trhra,LOC107600665,LOC107705826,LOC107666857,LOC107551182,LOC107679641,LOC107713802 coding downstream 218141 22124696 ~ 22129509 (-)
sybu LOC107666828,LOC107713821,LOC107705165,LOC107551189,LOC107679650 coding downstream 346594 21991274 ~ 22001056 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715 coding upstream 68827 22419870 ~ 22523750 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding upstream 412161 22763204 ~ 22767288 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding upstream 428192 22779235 ~ 22797020 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding upstream 461526 22812569 ~ 22815095 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding upstream 564924 22915967 ~ 22929917 (-)
G115262 NA non-coding downstream 110584 22230240 ~ 22237066 (-)
G115170 NA non-coding downstream 473599 21873826 ~ 21874051 (-)
G115155 NA non-coding downstream 522213 21825198 ~ 21825437 (-)
G115098 NA non-coding downstream 958503 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 1016292 21331012 ~ 21331358 (-)
G115335 NA non-coding upstream 332384 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 422723 22773766 ~ 22774032 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding upstream 534672 22885715 ~ 22888001 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding upstream 559836 22910879 ~ 22911323 (-)
G115559 pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC107556080,LOC108437351 non-coding upstream 607641 22958684 ~ 22960933 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 258558 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 379115 21964855 ~ 21968535 (-)
G115149 NA other downstream 543846 21801475 ~ 21803804 (-)
G115141 NA other downstream 642691 21704018 ~ 21704959 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 733447 21605958 ~ 21614203 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other upstream 541059 22892102 ~ 22901187 (-)
G115554 NA other upstream 581584 22932627 ~ 22933967 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 1168765 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 1231950 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 1317022 23668065 ~ 23675345 (-)

Expression


Co-expression Network