cd83 (cd83,LOC107705228,LOC107666866)


Basic Information

Item Value
gene id cd83
gene name cd83,LOC107705228,LOC107666866
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22330179 ~ 22332034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261610.1
CCAAAAGCAAAAGTTAATCGCACTGTATAAAAGTCACAGAGTCGACGGCAAACTGCAGTCAGCACCATGCATGGCTTCTTCGAATTAGTCGCTTGTCTTGCGATTTTAGCTGTGGCGGAGGGAGCGCGGCGGGAGATTTTCTCCTTCAGTGGTGAGGACGCCGTCTTGAGCTGTGAGGCGAAATCAAAGCCCGACGTCCAGTACCGTTCCGTCATGTGGTACAAGGTTTCTGAAGAGCCTCATCAGCTGCTATCTGGACTTGTGAGGAAGAGACTAACTGATAACAATGGCACGGTGGAAGAATATAAAGGTGTCGCACGAGAGGTCAAGCTGTTTGAGAGCTCAATGAGCCTTTTTCTGTCTAATGTGACTGCAGAGGACAGTGGGATATACAAATGCTTTCTGTCTGCTCCCCTTGGCCATCAGAACCAAGAAGGTGAAATCCTCCTAAAAGTCAGTGAGTTTgagaaaaatgaattgaatgGAAACGATACGATTTATGGAGTTCTGGCCATCACGGTACTCGTTATTGCATTCCTGATGTTCTGCATAAGCTATGTTTGTTTAAGGAATGCGTTTCAAAGTAACAAGAAAGACTCTTTGGTGAAAATACAGCATCAAGGCAAGAACGTGATCGTCTCCAATCATTTGATATGCAAGACAATGCCTGAAGTGTATGTGTGATGGTAACCAGGATACATGGAGTGGTGTCCAGAAGAAGTTAAATGAAGCTTTGTGCACTGGACATGGAGAGTCTACAGAGCTTGTGCTGAAGAAAACCATGGGTTGACGCACGGCAAGGTGCAAGAGCATCATCAGCATCAACATCTTCAGAGAGTAACATAGTGAAACCGTAAGACCAAACtgaatatgcttttattatggTTGCTTGTTGGTGAACACTGTGGAGGTGGAGAAAGACTATGTTTGCATGTTATGCTTGGAGATGAGCGCTTTTCAGGCATGTCGACAGGTTTTCCACCGAAGAAAAGAGATGATAGTAAAGTTCTCAGTCTGTATagacaaataaaacacttttagataatttttgcattttttttatgttgtcatgcttatagaaatacaaacaaaaaaactacctCAGAATATTTTCctgttgttaaaaaatatacatgattCAATGCATTTCCTTTAATTAATTTGGGATATGTCAATGTCATTCTTTTTAATGATATGGAGGTATTGTgcgtttactgaataaagttgATGAAAACttcttta

Function

symbol description
cd83 Acts upstream of or within T cell activation involved in immune response and dendritic cell antigen processing and presentation. Located in cell surface. Part of IgM immunoglobulin complex. Is expressed in several structures, including digestive system; gill; heart; immune system; and integument. Orthologous to human CD83 (CD83 molecule).

NR:

description
PREDICTED: CD83 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261610.1 True 1242 mRNA 0.41 5 22330179 22332034

Neighbor

gene id symbol gene type direction distance location
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding downstream 121575 22179651 ~ 22208604 (-)
trhra trhra,LOC107600665,LOC107705826,LOC107666857,LOC107551182,LOC107679641,LOC107713802 coding downstream 200670 22124696 ~ 22129509 (-)
sybu LOC107666828,LOC107713821,LOC107705165,LOC107551189,LOC107679650 coding downstream 329123 21991274 ~ 22001056 (-)
zdhhc3a zdhhc3a,zdhhc3,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding downstream 347376 21972672 ~ 21982803 (-)
kiaa1143 kiaa1143,zgc:77056,LOC107713807,LOC107600662,LOC107551194,LOC107679647 coding downstream 359472 21968837 ~ 21970707 (-)
zgc:113232 zgc:113232,LOC107705846,LOC107666867,LOC107600626,LOC107756222,LOC108437324 coding upstream 3129 22335163 ~ 22344100 (-)
snrnp48 LOC107679653,LOC107551179,LOC107756216,LOC107600666 coding upstream 15616 22347650 ~ 22351043 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715 coding upstream 87836 22419870 ~ 22523750 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding upstream 431170 22763204 ~ 22767288 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding upstream 447201 22779235 ~ 22797020 (-)
G115262 NA non-coding downstream 93113 22230240 ~ 22237066 (-)
G115170 NA non-coding downstream 456128 21873826 ~ 21874051 (-)
G115155 NA non-coding downstream 504742 21825198 ~ 21825437 (-)
G115098 NA non-coding downstream 941032 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 998821 21331012 ~ 21331358 (-)
G115335 NA non-coding upstream 351393 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 441732 22773766 ~ 22774032 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding upstream 553681 22885715 ~ 22888001 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding upstream 578845 22910879 ~ 22911323 (-)
G115559 pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC107556080,LOC108437351 non-coding upstream 626650 22958684 ~ 22960933 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 241087 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 361644 21964855 ~ 21968535 (-)
G115149 NA other downstream 526375 21801475 ~ 21803804 (-)
G115141 NA other downstream 625220 21704018 ~ 21704959 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 715976 21605958 ~ 21614203 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other upstream 560068 22892102 ~ 22901187 (-)
G115554 NA other upstream 600593 22932627 ~ 22933967 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 1187774 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 1250959 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 1336031 23668065 ~ 23675345 (-)

Expression


Co-expression Network