LOC122360927 (LOC107666765,LOC107728460)


Basic Information

Item Value
gene id LOC122360927
gene name LOC107666765,LOC107728460
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19305509 ~ 19307500 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261764.1
TCCTCGTGACCGTAATATAACATTCAGGGTTCGTGACTAGAAAAACTTGATTGCTCTAAGCCAGAGTCAACAAAGGTGTGTCATCTTTGTAAAGCACAGAGAAGATAAAACAGTCTAAGATTACCAAACAGAACAATGGAGCCCCAAGAAGACTGGAATACATCAGAGAAATCCAAGCTGCTGCAGCCTGGGCCGCCTCCATACCAGGACCATCTTAGACAGCCTCCTCCAGGGAACTTCCAGAGCACTTCTGGCTATCAAGCCCAGCAGTATGGAGCTCCAGGGCCTTACGGCCAAGGGCCTTATCCAGGACATGCTGCGGTTACTGTGCAACCTGCAGTTTATGTGACCTCCACTCCACTGGTGTATCCACTGCCAGATTACCTGGGCTACTCCATCTTTACCACGCTGTGCTGCTGCTTACCTCTGGGTATCGCTGCGCTGGTTTTCTCTGTCAACactCGGAATGCCAACATGTCTGGGCAACAACAGTTAGCAGAGAGAAACTCCAAAATGGCGTTCACTCTTAATAATATTGCTCTTGGTATTGGCATTGTCGTCTTGGTGTTGTATGTCACTCTCATCGTTGTCCACAATAAACAGCACTCGGATCCATAACTGTTCAGGAACACAAGGAATGGCAAGATAGAGGGCTTTCCAAAAAATAACACTGTATATGACATAATAAATTGACATTTCCTTCTGGCTCTTTTGTAGTGTAAAATTATTGTTACTAAAACATGCTTTAAAGCTGATTATCTTATGTTTTAAAATCGTGTGAACAGCGACCATCGCTGTATAAATATTGatgcttgtttttcttcctgtcttttgattatgtattttattaaaactttaaatgacCAATAATGCCCacctattttctttttaataaccGCTTGAGCACTGTCCGTTCTTATTCCTAAATAAATCACTCTTATAAGA

Function

NR:

description
PREDICTED: synapse differentiation-inducing gene protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261764.1 True 945 mRNA 0.42 2 19305509 19307500

Neighbor

gene id symbol gene type direction distance location
LOC122360453 NA coding upstream 8720 19293027 ~ 19296789 (+)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 32238 19262614 ~ 19273271 (+)
si:dkey-33i11.1 si:dkey-33i11.1,LOC107666767,LOC107726681,LOC107728459 coding upstream 45906 19251356 ~ 19259603 (+)
rgl2 rgl2,LOC107666852,LOC107726673,LOC107665651 coding upstream 64870 19214486 ~ 19240639 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446 coding upstream 252893 19029066 ~ 19052616 (+)
LOC122360047 LOC107666749,LOC107686570 coding downstream 1872 19309372 ~ 19311747 (+)
LOC122360969 NA coding downstream 15531 19323031 ~ 19325543 (+)
LOC122360278 LOC107728464,LOC107666853,LOC107728467,LOC107666779,LOC107686805,LOC107592514,LOC107728451,LOC107666749 coding downstream 34839 19342339 ~ 19348454 (+)
LOC122360279 LOC107666755,LOC107728493 coding downstream 44606 19352106 ~ 19354160 (+)
gapdhs gapdhs,LOC107666830,LOC107577408,LOC107709572,LOC107686531,LOC107728487 coding downstream 62834 19370334 ~ 19382363 (+)
G114345 NA non-coding upstream 57189 19245933 ~ 19248320 (+)
G114354 NA non-coding upstream 99545 19202394 ~ 19205964 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding upstream 149442 19095730 ~ 19156067 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding upstream 192782 19068602 ~ 19112727 (+)
G114299 NA non-coding upstream 325637 18977551 ~ 18979872 (+)
G114379 NA non-coding downstream 764 19308264 ~ 19309214 (+)
G114520 dpys,LOC107728457,LOC107686378,LOC107666745 non-coding downstream 340404 19647904 ~ 19648864 (+)
G114556 NA non-coding downstream 371883 19679383 ~ 19679686 (+)
G114558 NA non-coding downstream 374640 19682140 ~ 19682452 (+)
LOC122360931 NA non-coding downstream 395225 19702725 ~ 19719929 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 12628 19283761 ~ 19292881 (+)
fxyd11 NA other upstream 21994 19280383 ~ 19283515 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other upstream 52463 19197804 ~ 19253046 (+)
LOC122360132 NA other upstream 463925 18827254 ~ 18841584 (+)
LOC122360692 NA other upstream 484373 18808744 ~ 18821136 (+)
G114382 NA other downstream 19604 19327104 ~ 19328763 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 336329 19643829 ~ 19647806 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other downstream 912144 20219644 ~ 20227077 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 960041 20267541 ~ 20304684 (+)
siglec15l NA other downstream 1459778 20767278 ~ 20770392 (+)

Expression


Co-expression Network