rnf144b (rnf144b,LOC107592436,LOC107686312,LOC107556966,LOC107714339)


Basic Information

Item Value
gene id rnf144b
gene name rnf144b,LOC107592436,LOC107686312,LOC107556966,LOC107714339
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20022244 ~ 20027005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261878.1
ATGGAGGTCTTCGCTCCACTTTTTCTGAAATTGAGGGCTAAACAACAACAGGAGGCAGGCATGGAGGCAGAAAAAGCCATGATCCTCTGCAAACTCTGCCTGACGGATTGTCCTGAGCTGGAGACCAGCACGCTGCAGTCCTGTAactgtgtgttctgtgttcagTGTTTAAGGCAGTATGTCCAGCTGGCAATTCAGGGAGGCGCAGGCAGTGCCATCACCTGCCCTGATCCGGCCTGCAAGAACCCTGGAACTCTGCTGGACTCTGAGCTCGCCTCGTTTGCTCCCAGTGATCAGGTTGAGCTCTATCAGCGGCTACGATTTGAAAGAGGAGTTCAGTTAGACCCCAATAAGGCTTGGTGTCCCATGCTGGACTGCCAGGCTGTGTGCAGTGTGACGCCCGGAACCGAAGGCAAACCGCTTCCCGTCCCCTGCCCGGCCTGCCATGCCGTCTTCTGCTGCGGCTGCAGAAGCCCCTGGATCGACGGTCACTCCTGCTCCCAGCACCAGCCACTGATGGCTCCGTCAGCTGACAGTGCACTGAGCAGCGCCGATACTGATGCAGCCATTAAACAGTGTCCGATGTGTGGCGTCTATATAGAGCGCAATCAAGGCTGCGCACAGATGCTCTGCAAGAGCTGCAAACACACTTTCTGCTGGTACTGCCTGCAGAACCTGGATGGCGATATATTTCTGAGACATTACGATAAAGGACCGTGCCGAAACAAGCTGGGGCACTCCAGAGCTTCCGTCATGTGGAACAGGACACAGgtGGTTGGTATACTGGTGGGCGTCAGCATCATCGTGCTAGTCACGTccccgctgctgctgctggcctCTCCCTGCATCCTGTGCTGCGTGTGCAAACCCTGTCAGGCCAAGAACaccaagaaaaagaagaagaaagacaagaagCCATCAGATTCCACAGCGTAGGAGAACTCCTAAGAATCAACAGGCGTAGCATCCTCCACGTGCCAATCCTCAGTCTCGCTAGCCAGGTGCACAAGTGCCTCATTCTCAGTGCCTGGTGAAGTTAGCGGATTTATTTTGCCTTCCGGTGCATTATGGGAAAAAGAAGCATGTTGTTTACTGAGTAAACAACATCTGTAATGGAATGGCCCTTTCTCCACtaagctgtatatatataaaaaaaaaaatatatatatatatatatatatacacacacacacacacacacacatgaactgTAGCAATGAGTTCAACTCTTTATTTCCATGTAGCCTTCCGGACCAAAGGCCCTGCTGTTTATTTCCGTGTACtataatatgtaaatactgtatttatgagTCTGGGTACTGTCCTGTgttctttttacatttgttgaTTTTTCTGCATCAGATATTTTATAACTTCATTACAATAAACTAAACACCTGAGCAGTGAAA

Function

symbol description
rnf144b Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in mitochondrial membrane. Orthologous to human RNF144B (ring finger protein 144B).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF144B

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11975 RNF144; E3 ubiquitin-protein ligase RNF144

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261878.1 True 1409 mRNA 0.49 8 20022244 20027005

Neighbor

gene id symbol gene type direction distance location
sqlea sqlea,sqle,LOC107666801,LOC107556968,LOC107714342,LOC107686341,LOC107592438 coding downstream 2012 20011295 ~ 20020232 (-)
si:dkey-122a22.2 si:dkey-122a22.2,LOC107719144,LOC107666836,LOC107592440,LOC107686774,LOC107556959 coding downstream 135581 19865726 ~ 19886663 (-)
zgc:101716 zgc:101716,LOC107686482,LOC107556972,LOC107728463,LOC107709702,LOC107666748,LOC107592507 coding downstream 531511 19487757 ~ 19490733 (-)
upk1a upk1a,LOC107728482,LOC107666813,LOC107592444,LOC107686548,LOC107709649 coding downstream 542770 19475818 ~ 19479474 (-)
LOC122359968 LOC107728465,LOC107666778,LOC107726656,LOC107592540,LOC107592151,LOC107665645,LOC107665648 coding downstream 760450 19259324 ~ 19261794 (-)
ccdc127a ccdc127a,LOC107686768,LOC107719164,LOC107556965,LOC107592531 coding upstream 9343 20036348 ~ 20039187 (-)
mrpl32 mrpl32,LOC107592435,LOC107666771,LOC107686307,LOC107714338,LOC107735708,LOC107580730 coding upstream 12942 20039947 ~ 20041361 (-)
adam22 adam22,LOC107719137,LOC107714333,LOC107666740 coding upstream 49802 20076807 ~ 20127963 (-)
dbf4 LOC107666861,LOC107719134,LOC107592429,LOC107686229,LOC107714332,LOC107592324 coding upstream 102038 20129043 ~ 20133941 (-)
rundc3b rundc3b,LOC107666772,LOC107686653,LOC107719153 coding upstream 112407 20139412 ~ 20154648 (-)
G114626 LOC107714343,LOC107666800,LOC107592439,LOC107719142 non-coding downstream 50287 19959867 ~ 19971957 (-)
G114611 NA non-coding downstream 302308 19719186 ~ 19719936 (-)
G114608 NA non-coding downstream 328851 19693138 ~ 19693393 (-)
G114607 NA non-coding downstream 338314 19683622 ~ 19683930 (-)
G114550 rims2,LOC107592505,LOC107728483,LOC107709709 non-coding downstream 403167 19609105 ~ 19619077 (-)
G114663 cldn12,LOC107682396,LOC107686255 non-coding upstream 74039 20101044 ~ 20104270 (-)
G114718 NA non-coding upstream 147158 20174163 ~ 20244153 (-)
G114741 NA non-coding upstream 189098 20216103 ~ 20217581 (-)
G114747 NA non-coding upstream 218016 20245021 ~ 20245239 (-)
G114768 NA non-coding upstream 275978 20302983 ~ 20305444 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other downstream 364520 19596432 ~ 19657724 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other downstream 601150 19416962 ~ 19421094 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 1201134 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 1323837 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 1350970 18669607 ~ 18671274 (-)
G114715 NA other upstream 139790 20166795 ~ 20177758 (-)
G114793 NA other upstream 414960 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 609120 20636125 ~ 20650937 (-)
G114901 NA other upstream 624972 20651977 ~ 20653574 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other upstream 985602 21012607 ~ 21017105 (-)

Expression


Co-expression Network