thbs3a (thbs3a,thbs3,LOC107666739,LOC107714313,LOC107719129,LOC107686644,LOC107592643)


Basic Information

Item Value
gene id thbs3a
gene name thbs3a,thbs3,LOC107666739,LOC107714313,LOC107719129,LOC107686644,LOC107592643
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20203095 ~ 20217152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262083.1
tctctctctctcctgcacaGCGCAGGTTTGTTCCAGTGGAAATATTTCGTGTTTCAATGCATCGCCGACGAATCTGTTCTGGATATATTCTGCATGACTTTTGCGTGAATTATTTGTAAACATGAAAGTTTGGGTCGGTTTCTTCGTGTTCGTGTTCGTCTGGTTCGCAGAGAGCGCGCAGAAACAAGACGTACCggTGATAGACGTGTTGAGTTTGGAGGATGTGAAGCAGACCGTGGCTGCGGTAGAGAAGATCTCTTTATCTCTGAGGACTCTCAGTGATGTGTATGTGATGTCTTCCTTCCGTCTGCCTGCTAAACTGGGTGGAGTTCTGCTGGGCCTCTACAACAAGCAGGATAACAAGAAATACCTGGAGGTCGCCATCATGAGCAAGATTAACAAAGTTCTGATCCGGTACGTTCGTGAAGATGGGAAGTTGCACACGGTAAACCTGCAGAGCCCAAATCTGGCAGACGGACGCTCTCAGTCTATTATTCTCCGTGTCGGTGGCCTGCGCAGAGAGCACCTGAGCCTCGAGCTCTATGTGAACTGTCGCCTGGCTGACTCCGCCCAGCGGCTGCCTCTATTGGTCGCTCTGCCCAGAGATGCAGAGCTGGTGGAGATTCGTAATGGCCACAAGGCATACACTAGGATGCAGGGATCAGTGGAGTATCTTAAACTGGCACTAGGGGGCACTGTTGCCCAAGCTGGGGCCCTGACCGACTGTCCCTTTCAGGGGGACGCCTCTTCATACAACATAGtgaacGGCGAGGTTAATTCTATTCTAGGTGATCACACTaaagctctgattggccagctgatCATCTTTAATCAGATCTTGGGAGAGCTGAGAGAAGACATCAGAGAACAGGTGAAAGAAATGTCTCTTATCAGGAATGCTATTCTGGAGTGCCAGATGTGTGGATTTCATGAGCCTCGTTCACGCTGTCAGCCCAACCCCTGCTTTAAGGGCGTAGGCTGCATGGAGACGTTCGAATTCCCAGGGTACCGCTGTGGCCCCTGTCCGGAGGGCATGACAGGGAATGGCACACACTGTCAGGATATAGATGAGTGTGCAGAGGCTCAGCCGTGTTATACACCAGGCACATGTGTTAACACAGCTAAAGGTTTCACCTGCGAACCCTGCCCACCCGGATTCTGGGGTCCTCCTCTCTCTGGTTTCGGTCTGGAATATGCAAAGAGTCATAATCAGGAATGCTCTGATATCGATGAATGTCTTGATTTGTCCAATGCCTGCACACCCAACTCCATCTGCATCAACACCGTTGGATCGTATCGATGCGGTCAGTGCAAGGTTGGATATGTCGGGAATCAGACAGCTGGATGTTTCCCTCGGAAATCGTGCGCTTCGCTCAGTTTCAACCCCTGTGACACTAACGCTCACTGCGTCATGCAGCGGAGCGGAGACGTCACCTGCGCTtgtaaTGTCGGATGGGCCGGTAACGGTCACACCTGTGGGAAGGACACTGATATTGATGGTTACCCGGATCGTTCCTTGCCCTGCATGGACAATGACAAGCACTGCAAACAGgaCAACTGCGTCTTCACACCCAACTCCGGTCAGGAAGATGCAGATAATGATGGGATTGGAGACCAGTGTGATGAGGATGCAGATGGAGATGGAATAAAGAACGTAGAGgataACTGTCGGTTGGTTTCCAATAAAGATCAGCAGAATTCTGACACTGATTCGTTCGGTGATGCATGTGATAACTGTCCCACCGTTCCCAACATCGACCAGAAAGACACTGACAATAACGGAGAGGGAGACGCTTGTGACGAGGACATCGATGGAGACGGAATCCAGAATGTGTTAGATAACTGTCCCAAAGTGCCGAACCCAATGCAGACGGACCGGGACAGAGACGGAGTCGGGGACGCGTGTGACAGCTGTCCTGAGATCAGCAACCCCATGCAGACAGATGTAGACAATGACTTAGTCGGGGATGTTTGTGACACCAATCAAGACACTGATGGAGACGGACACCAGGACACTCGAGATAACTGCCCAGACATCCCAAACAGCTCTCAGCTGGACTCGGACAATGACGGCATCGGAGATGACTGTGACGAGGACGATGATAACGACGGAGTCCCGGACAATTACGCCATCAACGGCATTGGACCCGATAACTGCAGACTGATTTCCAACCCCAACCAGAAAGACTCAGACAGTAACGGAGTCGGTGATGTATGTGAGAATGACTTTGACAATGATGCGGTGATGGATTTAGTCGACGTGTGTCCAGAAAGTGCTGAAGTCACACTGACGGATTTCAGAGCATATCAGACAGTCATTCTGGACCCCGAGGGTGACGCTCAGATCGACCCGAACTGGGTGGTCCTCAATCAGGGTATGGAGATTGTTCAAACCATGAACAGCGACCCGGGCTTGGCAGTGGGTTACACAGCGTTTAACGGGGTGGACTTCGAGGGAACTTTTCACGTTAACACGGTGACTGACGACGACTACGCTGGCTTCATCTTTGGTTATCAGGATTCATCTAGTTTCTATGTGGTGATGTGGAAGCAGACCGAGCAGACGTACTGGCAGTCGATCCCCTTCAGGGCCATGGCTGAACCTGGTCTGCAGCTCAAGGCAGTGAAGTCTCGTACAGGTCCAGGTGAGTTCCTCCGCAATGCTTTGTGGCACACGGGGGATACGGATGGAGAGGTGAAACTGCTCTGGAAAGACCCACGAAACGTCGGCTGGCAAGACAAGACTTCGTACCGGTGGCAGCTTAGCCATCGGCCACAGGTCGGCTACATCAGGGTGAAGCTGTATGAAGGCGCAGAGATGGTGGCTGACTCCAATGTTGTGATTGACACCACCATGAGAGGGGGGCGCCTGGGCGTGTTCTGCTTCTCTCAAGAGAACATCATCTGGTCCAATCTGCGCTACCGCTGTAACGATACCGTCCCGGAGGACTTCAGTTCACACCGTAAACAGGTTCTAATGCACATAAAGGTGTGAGGGGAGTGAGACGCCCTCCGTCTCTCTCTAGACCCTCTGAAACCCAGCGTGGGGCCACTGAACTCTTGTGTGCGAGGGGCCGAACAATCAGGACAGATGAGAGATTTACCCAGCGTCTGTGTCACTCCGGATAAGGAGACTGaatgaaatgagagaaaagacttttattttacatttcgtGCGTTTATGTGTCGTATGTCATCGCGGAGACGTATAATGTGTGAGTATGAGTGTATGTTTGAGAGAGTCCATTTGCATTAACAGCTGTCTTGAAATAAAGGGATATGATGTATTTTCTAGAACACAACCAATACCAAAATGGTCCtgtaatcattattaataaatgacaaaaacagaaatcagttcttaaaatggcaaaaaaattacaatttaatatgtcAATCCCAAAATTCTCCTGTTCTGTGTGCCACAAGCTAGGCTCAAGCAtatgtatagaaatatttaaataaaaaaaaattatattaaa

Function

symbol description
thbs3a Predicted to enable calcium ion binding activity and heparin binding activity. Acts upstream of or within mesenchymal to epithelial transition and somite development. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including brain; ectoderm; epidermis; pectoral fin; and pharyngeal arch. Orthologous to human THBS3 (thrombospondin 3).
thbs3 Enables heparin binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within bone trabecula formation; growth plate cartilage development; and ossification involved in bone maturation. Located in perinuclear region of cytoplasm.

NR:

description
PREDICTED: thrombospondin-3

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262083.1 True 3482 mRNA 0.50 23 20203095 20217152

Neighbor

gene id symbol gene type direction distance location
mtx1a mtx1a,LOC107719130,LOC107666872,LOC107592422,LOC107686169,LOC107592302,LOC107714314 coding upstream 1719 20191045 ~ 20201376 (+)
nudt17 nudt17,LOC107666849,LOC107719132 coding upstream 21238 20175926 ~ 20181857 (+)
si:dkey-7j14.5 si:dkey-7j14.5,LOC107719133,LOC107666850,LOC107592309,LOC107686177,LOC108269355,LOC108436563 coding upstream 27644 20170492 ~ 20175451 (+)
si:dkey-7j14.6 LOC107719161,LOC107666753,LOC107714322,LOC107592973 coding upstream 33843 20166795 ~ 20169252 (+)
LOC122360562 LOC107719162,LOC107666880,LOC107592425 coding upstream 36977 20159193 ~ 20166118 (+)
txnipb txnip,LOC107666757,LOC107592283,LOC107686154,LOC107714329 coding downstream 10351 20227503 ~ 20231329 (+)
LOC122361080 ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270,LOC107686108 coding downstream 28082 20245234 ~ 20257491 (+)
tbx20 tbx20,LOC107719124,LOC107600539,LOC107592953,LOC107686728,LOC107666841,LOC107737833 coding downstream 149839 20366991 ~ 20376376 (+)
smarcc1a smarcc1,smarcc1a,LOC107600486,LOC107686050,LOC107666814,LOC107592245 coding downstream 177561 20394713 ~ 20409623 (+)
cspg5a LOC107719119,LOC107666839,LOC107686028 coding downstream 206856 20424008 ~ 20452450 (+)
G114593 NA non-coding upstream 121049 20079873 ~ 20082046 (+)
G114578 NA non-coding upstream 124313 20021729 ~ 20078782 (+)
G114589 NA non-coding upstream 162507 20038574 ~ 20040588 (+)
G114585 NA non-coding upstream 173463 20026841 ~ 20029632 (+)
G114582 NA non-coding upstream 184924 20016710 ~ 20018171 (+)
LOC122359979 NA non-coding downstream 17846 20234998 ~ 20242544 (+)
G114707 NA non-coding downstream 196405 20413557 ~ 20413889 (+)
LOC122360972 NA non-coding downstream 197058 20414210 ~ 20422189 (+)
G114813 NA non-coding downstream 368908 20586060 ~ 20586827 (+)
G114826 NA non-coding downstream 420294 20637446 ~ 20638640 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 555289 19643829 ~ 19647806 (+)
G114382 NA other upstream 874332 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 910214 19283761 ~ 19292881 (+)
fxyd11 NA other upstream 919580 19280383 ~ 19283515 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other upstream 950049 19197804 ~ 19253046 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other downstream 2492 20219644 ~ 20227077 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 50389 20267541 ~ 20304684 (+)
siglec15l NA other downstream 550126 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 1632837 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 1666757 21883909 ~ 21921531 (+)

Expression


Co-expression Network