akirin1 (akirin1,LOC107700743,LOC107730931,LOC107704951,LOC107597130)


Basic Information

Item Value
gene id akirin1
gene name akirin1,LOC107700743,LOC107730931,LOC107704951,LOC107597130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23823688 ~ 23831522 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262086.1
CCCCGAAAAAGGCGATTTAGAAGGAGAATTCGACGTGTTTTAATATCGAAAAGGTGTTGTTTTACCGTTGGTTTTGTTTATTGTCTTATTAAATCAGCGATCATGGCTTGTGGCGCGACGTTGAAGCGATCTATGGAGTTTGAGGCCCTTCTCAGCCCGCAGTCCCCCAAGCGGAGGAGGTGCAATCCTCTACCGGGGACTCCGACTACTCCTTCCCCGCAGAGGTGCAGTCTTCGCCCGTCAACAGAGAGCCCGGCACACTCGATGTCGCCCCAGTCTATGGGTGGAGAACACAGGCTAACTCCAGAGCAGATCTTCCAGAACATTCGTCAGGAGTACAGTCGCTATCAGAGGCGACGGCAGTTGGAAGGGGCCTTCAACCAGACTGATCCCTGCAGCTCCACTGATATCCAGAGCTCCAGTCCCGCCCTCACCTCCCCCAGCTCTCCCACAGgtGCCTCATCATTGAAGAAGGATCAGCCACTGTTCACACTGAGGCAGGTTGGCTATTTGTGTGAGCGCCTTATCAAAGATCACGAGGAAAAGATGCGTGAAGAATACGAACAGATACTGAACACAAAGCTTGCAGAACAATATGAGTCCTTTGTGAAATTCACACAGGATCAGATTATGCGAAGATATGGCGCCAGGCCTGCAAGCTatgTGTCTTGAAGAACATTATAGATGGTACTAGCCACCCTTCAGCAGCTGGTTGCTGTAGAACCAGCCAACTTCGTTTCACTTGAAATTTCCTCATacttttgattctttttttttttttttttttcctcccccctTTAAAATGCTTGGGTGCCATGGTCTATCCACATTTAACTccattttttttgctgaactGTTACTGATGGCCCAACACCAAACGTGCATATCTAGATGCATTCTAAGGAAGTTTAATCTTAAGAAATTGTGGGAAAAGATGTCAAACTACCGCTGTAAAAAGCTTGGCTGATGCGATCATCTCTGTATAATGTAATGTGACTGACCTGCAGCAGATATACCAGACTCTTCCTCTATCCTTCAGTCTGTTTTTAActctccaatttttttttttttttttttcttttttgacaaataaaaaatctgtgaTAAGTCAGGAATTGTACCGATTCGATTTCttgcaaatattttctgtaataaatTGTGTATAGGTTCGTATGTTTGAATGTCAATTTAAATTtggtttaaaacacaaatatatattgt

Function

symbol description
akirin1 Predicted to enable transcription coregulator activity. Predicted to be involved in several processes, including myoblast migration involved in skeletal muscle regeneration; positive regulation of lamellipodium assembly; and positive regulation of macrophage chemotaxis. Predicted to be active in chromatin and nucleus. Orthologous to human AKIRIN1 (akirin 1).

NR:

description
akirin 1(1a)

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262086.1 True 1221 mRNA 0.44 5 23823688 23831522

Neighbor

gene id symbol gene type direction distance location
prss35 LOC107704868,LOC107730928,LOC107716822,LOC107716824,LOC107730929,LOC107597124,LOC107587853 coding upstream 71652 23745530 ~ 23752036 (+)
prdm13 prdm13,LOC107716819,LOC107700751,LOC107704864,LOC107711749 coding upstream 194828 23623739 ~ 23628860 (+)
zgc:172323 zgc:172323,LOC107587895,LOC107700752,LOC107716818,LOC107711723,LOC107683363,LOC107577100 coding upstream 204863 23615078 ~ 23618825 (+)
pou3f2b pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 coding upstream 300412 23520144 ~ 23523276 (+)
klhl32 klhl32,LOC107704937,LOC107700760 coding upstream 432794 23369980 ~ 23390894 (+)
rhbdl2 rhbdl2,LOC107716826,LOC107704870,LOC107597139,LOC107730925,LOC107700688 coding downstream 428 23831950 ~ 23835923 (+)
gja9a LOC107587758,LOC107716827,LOC107730936,LOC107704871,LOC107700742 coding downstream 4532 23836054 ~ 23841877 (+)
rragca rragc,rragca,LOC107700741,LOC107704952,LOC107716860,LOC107730935,LOC106605136 coding downstream 12903 23844425 ~ 23851478 (+)
pou3f1 pou3f1,LOC107755232,LOC107597138,LOC107700687,LOC107716828,LOC106582989 coding downstream 226728 24058250 ~ 24061143 (+)
fhl3a fhl3a,fhl3,LOC107587754,LOC107716861,LOC107700740,LOC107704953,LOC107755242,LOC107597118 coding downstream 259586 24091108 ~ 24124467 (+)
G115747 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 non-coding upstream 8589 23717851 ~ 23815099 (+)
LOC122360295 NA non-coding upstream 21104 23786828 ~ 23802584 (+)
G115730 NA non-coding upstream 146429 23665266 ~ 23677259 (+)
G115718 NA non-coding upstream 247040 23572973 ~ 23576648 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding upstream 255634 23555621 ~ 23568054 (+)
G115782 NA non-coding downstream 25161 23856683 ~ 23856949 (+)
G115784 NA non-coding downstream 26694 23858216 ~ 23858551 (+)
G115791 NA non-coding downstream 238759 24070281 ~ 24070854 (+)
G115793 NA non-coding downstream 246726 24078248 ~ 24078455 (+)
G115795 NA non-coding downstream 251334 24082856 ~ 24083070 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other upstream 1242 23815924 ~ 23822446 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other upstream 211295 23609448 ~ 23612393 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other upstream 464909 23274989 ~ 23358779 (+)
G115449 NA other upstream 569122 23251382 ~ 23254566 (+)
rps9 rps9,LOC107587787 other upstream 599760 23222050 ~ 23223928 (+)
LOC122360598 NA other downstream 942297 24773819 ~ 24832618 (+)
G116057 NA other downstream 1171740 25003262 ~ 25057168 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other downstream 1721341 25552863 ~ 25554807 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other downstream 1886998 25718520 ~ 25778407 (+)
hmgn2 NA other downstream 2381210 26212732 ~ 26215779 (+)

Expression


Co-expression Network