LOC122359996


Basic Information

Item Value
gene id LOC122359996
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22999449 ~ 23003110 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252753.1
CGTGGCTCTTCTTCAGAAGGATGTTCAGGATCTGGCAGTGCTCCTCAGAGCCAGGAAGatcTGGTTTCAAGATTATGCTGCATAACCAGGAAATTAGAAGTTAGAACTACTTTAAAGGTAAAGCAGACGAGTCAACCGGTCTCATTGATGGAGGTAGGTTGAGAATGAAACGTGTGAGAGCAAAACTAAACGTTCAAGGACAGGTCAAAAGTATTAGGAGTCTATAATTAAAGGTAAACAAAGGTGTTTATGGGAGAATGGGACAGAGACGCCCTAACAGCGTTTAAATGCTAATACTACGCCTCCCTCTACAGTCTGGGCACACCATGTGCTTGCGTTTGCTGATGAGTGAGTGGCTGCTGTTTCCCGACTGATTTGATGTGGCagcatgaatgtaaatgaaaatgaagttcaatcaatacatattttttatttatttatatatttcttttgcattattttgtttcaCGTGAAGCAGTATCAATGGCTTTCCTGAATTTAGATGTCACGTATTTATGAACAAGCAAAAACGTgccagcaaaataaaatatttgatcgTTAAGCATTATAAATCCTGCTAAGCTTTAAGTGTCTTTTAATCTGTTTACTGTGGTAGGATAAACTGTATTTAACTCTGTACTGTTGGAAATAACAAGTTAAACATTACACATGTTAGTAGAGAGCACAGGATTCTGTATGAGATcagtcagaaagaaagaaacgagCACTTCTATTCaataagaatgcattaaaacttaTACCAAGTGATAgtaaattgttataaaaatgttctcTTATTTTATCAAAGTAAATGATCACGTTTTCCATAGAACTATTAAGCAGGCCAGCCTTTTATAATTGTGATAATGACaaattagaatgacttctgaatgatcatgtgacgctgaaaaaaaaaataagagtaatatattaaattgaaatatactaacatataaaacagttttgaaatggtaataatagtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252753.1 True 983 lncRNA 0.34 2 22999449 23003110

Neighbor

gene id symbol gene type direction distance location
LOC122359865 LOC107700662,LOC107556081 coding upstream 65467 22930421 ~ 22933982 (+)
elp6 elp6,LOC107756165,LOC107705426,LOC107704995,LOC107700678 coding upstream 90464 22907213 ~ 22908985 (+)
gabpb2b LOC107700702,LOC107755760,LOC107556107,LOC107705407,LOC107588481 coding upstream 93592 22901809 ~ 22905857 (+)
bnipl bnipl,LOC107588479,LOC107556108,LOC107700698,LOC107705419,LOC107755792 coding upstream 108766 22880673 ~ 22890683 (+)
prune prune,LOC107681429,LOC107705398,LOC107700697,LOC107588509,LOC107556083,LOC107756020 coding upstream 120239 22868956 ~ 22879210 (+)
LOC122360864 LOC107732827,LOC107587847,LOC107704842,LOC107700682,LOC107756122,LOC107597135 coding downstream 1802 23004912 ~ 23008459 (+)
LOC122360866 phactr4b,LOC107587745,LOC107597106,LOC107700669 coding downstream 27878 23030988 ~ 23053060 (+)
mlf2 mlf2,LOC107671951,LOC107704913,LOC107724787,LOC107714604 coding downstream 173714 23176824 ~ 23181429 (+)
atn1 LOC107714603,LOC107587791,LOC107704916 coding downstream 181918 23185028 ~ 23197722 (+)
phc1 LOC107672038,LOC107714597,LOC107724796,LOC107552845,LOC107587786,LOC107704919 coding downstream 231347 23234457 ~ 23243764 (+)
G115401 NA non-coding upstream 15749 22983061 ~ 22983700 (+)
G115342 NA non-coding upstream 230989 22767501 ~ 22768460 (+)
G115288 NA non-coding upstream 469187 22527157 ~ 22530262 (+)
G115200 NA non-coding upstream 997832 21997010 ~ 22001617 (+)
G115157 NA non-coding upstream 1169918 21828216 ~ 21829531 (+)
G115384 NA non-coding downstream 5494 23008604 ~ 23009835 (+)
G115371 NA non-coding downstream 49310 23052420 ~ 23077876 (+)
G115416 NA non-coding downstream 88233 23091343 ~ 23095410 (+)
G115420 NA non-coding downstream 105013 23108123 ~ 23109033 (+)
G115422 NA non-coding downstream 137963 23141073 ~ 23143458 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other upstream 23675 22964569 ~ 22975774 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other upstream 83972 22909535 ~ 22915477 (+)
G115193 NA other upstream 1020081 21977117 ~ 21979368 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other upstream 1077918 21883909 ~ 21921531 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 1126477 21849989 ~ 21872972 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other downstream 107173 23110283 ~ 23116815 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 161456 23164566 ~ 23169677 (+)
rps9 rps9,LOC107587787 other downstream 218940 23222050 ~ 23223928 (+)
G115449 NA other downstream 248272 23251382 ~ 23254566 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other downstream 271879 23274989 ~ 23358779 (+)

Expression


Co-expression Network