LOC122360693


Basic Information

Item Value
gene id LOC122360693
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18821517 ~ 18825388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252830.1
TTAAAATGGGGGAATGAAATATGAGCTATCTATTGCATATGCTGGCACAGAGTTAAAAAGGACACCTTTTCAATGGTGTCAATGTGTTTCCAAATAGGACACCAGTTTCTGCCTTTAATAAAGTTATAAGGAGCCTTAGCAGTGGAATTAGAGTCCAACTAGTGTTGAACcgttatgaataaataaaaccttatcATAATTTCAGAAGGCAGACATTtccaatacaaaaaaatgctctAAAATGAGCTGTTCAATTATCTCTTTAATGCATGAATCGGCAATAATCATCCAGTAAAATGAGAAATTGCCAACAACTtctgaaacatttctgaaagtagcctattttatatttgttcagaaacacaaaagcttttttgggcgttttgtttgtaaaatggtGCAAACACAGGATGTACGTTTTAATTGTCATGGCTAGAATTTTCTGAGGTCTCAACATAAAATGCctgctgaaactgaaaataactCCCGCAGAAACATTTAGGACAAAGGTATGAAGTGACaggattaaaaatatataaggtCAAAGCTATTATAAAAATCTAGCcttgttttaaaggttttttaaatCTGCAATTGTAGTTCTGCACTTAATGCATTAGAAACTGATTTCTCAGTtgataaatgaatgattcagtgtcaAACAGCTTTGTGCTAATCCAGTGTGTTCTAATCCAGTACCAGGGtggtttgtatttcaaataaattgtcTTCATGCATTATTTAAGCCAAACCACTGGATAAACTTAAATGTGTATTCAGCACCtggtaacaataataattataaaggTGAGTATCACTGTGCATAATGCTGAGTTAAAATCCTTATAGTCTTGTATTACACAACATACTGTACtatgaaattacaaataaagcCTGTTACACCTCA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252830.1 True 907 lncRNA 0.33 2 18821517 18825388

Neighbor

gene id symbol gene type direction distance location
LOC122361002 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding upstream 42134 18762264 ~ 18779383 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding upstream 69831 18704403 ~ 18751686 (+)
LOC122360773 LOC107666789,LOC107600495,LOC107705096 coding upstream 137002 18683319 ~ 18684515 (+)
LOC122360004 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding upstream 147806 18671959 ~ 18673711 (+)
LOC122360632 LOC107672171,LOC107552811,LOC107724789 coding upstream 209045 18608982 ~ 18612472 (+)
LOC122360014 apoa2,LOC107728486,LOC107688286,LOC107726689,LOC107592191,LOC107726687,LOC107671415 coding downstream 156701 18982089 ~ 18983105 (+)
LOC122360015 apoa2,LOC107592541,LOC107726689,LOC107688286,LOC107592191,LOC107728486,LOC107726687 coding downstream 159522 18984910 ~ 18986011 (+)
LOC122360019 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 coding downstream 177163 19002551 ~ 19013239 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446 coding downstream 203678 19029066 ~ 19052616 (+)
rgl2 rgl2,LOC107666852,LOC107726673,LOC107665651 coding downstream 389098 19214486 ~ 19240639 (+)
G114175 NA non-coding upstream 152330 18667845 ~ 18669187 (+)
G114172 NA non-coding upstream 156755 18663828 ~ 18664762 (+)
LOC122360728 NA non-coding upstream 167912 18650773 ~ 18653605 (+)
G114104 NA non-coding upstream 259606 18561280 ~ 18561911 (+)
G114103 NA non-coding upstream 260548 18560214 ~ 18560969 (+)
G114299 NA non-coding downstream 152163 18977551 ~ 18979872 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding downstream 243214 19068602 ~ 19112727 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding downstream 270342 19095730 ~ 19156067 (+)
G114354 NA non-coding downstream 377006 19202394 ~ 19205964 (+)
G114345 NA non-coding downstream 420545 19245933 ~ 19248320 (+)
LOC122360692 NA other upstream 381 18808744 ~ 18821136 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other upstream 59746 18758305 ~ 18761771 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other upstream 141424 18675560 ~ 18680093 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 974107 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 1084035 17732604 ~ 17737482 (+)
LOC122360132 NA other downstream 1866 18827254 ~ 18841584 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other downstream 372416 19197804 ~ 19253046 (+)
fxyd11 NA other downstream 454995 19280383 ~ 19283515 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other downstream 458373 19283761 ~ 19292881 (+)
G114382 NA other downstream 501716 19327104 ~ 19328763 (+)

Expression


Co-expression Network