LOC122360700


Basic Information

Item Value
gene id LOC122360700
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25782022 ~ 25788678 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252831.1
CAATAGCGCGCAGGCTCCCACGGAATCGACCAATCGTGGAACGCGAGGAGGCGGGATCTAAAGCGAACGTCGAAGCGATAAATAAGTAGCACGCCAGAAGGAAAATAAAGCCACAAATGCCGGATTTTAGGCGGTGTCATCATGGGACATTCTGGTGCCTTGCACCGAAGAAAGAGATTCCTCCAGATTCAGAACGTCGTGAGGAAAGCAGCGTATCACCCAAAGCCACCAATTGTCCCGAAAGCTTGTTTCCCTGCCTCCACTTGTGTTGAAGAGTCTGTCGGGCTCGTGATCTCCAGCAACGCTCGTCGCACGCGAACACGACTCTCTTCTTCCTCACAATGCAGGCCACAAAACTGCAGTCGCCATAAAGCCCAGCTTTGCCGGGAGTGTTTTGTATTCCGTCATCATTCAGGCTCAGGAAGGTTTTATGAGGTGCTTCGTTTCCAAAGAaatatgtctctctctctctatggcTTTTAGAGCTCCCCAAATCCACTCTTAACGGCACGCTCCGCGGCCCAGACGTCTCTTAGATTAAAGCAGAGCGATCCAAATAGCTCACTAGCACTTTCCTCTCACACTGCAATGATTTGCAAACTGATTACCACGTTGGACCAAACAGCCTCCGAGTGCGACGTCttatccttttattttttttttccctgagaGAGAGGTGTGTAACGAAGATGGAGGAAGAGACAAGTACCGGCGAATAGAAAACGATGAGGAAATTAGGGGAGCGCATAGAACGAGACGTTCAATAGGCCTCAGATGAGGGCTTCGAGCAGGAAGGAGGCTGGAGGAAGAATTGGATCTTATCCAGAAATTGATAACGGCGTGCCGAACGCTTAACTGGAATAACAGGCGAATGAATAGAAAGGATTGAGGgaatgaagtaaataaaaaccaCGGAGGCCTCGTAATGCGAGCGCGTCGGGTGATGGGTAAACGCGGGAGGAGGACGGGAA

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0051704 multi-organism process biological_process
GO:0044703 multi-organism reproductive process biological_process
GO:0007276 gamete generation biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0019953 sexual reproduction biological_process
GO:0032504 multicellular organism reproduction biological_process
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252831.1 True 971 lncRNA 0.50 3 25782022 25788678

Neighbor

gene id symbol gene type direction distance location
LOC122360721 NA coding upstream 3616 25776756 ~ 25778406 (+)
LOC122360719 NA coding upstream 8020 25752265 ~ 25774002 (+)
nr1d2a LOC107568872,LOC107688200,LOC107707640,LOC107728981,LOC107671434,LOC107592106 coding upstream 69906 25703863 ~ 25712116 (+)
ube2e2 ube2e2,LOC103388353,LOC108256709,LOC103027361,LOC102233395,LOC108243292,LOC103357958,LOC108410980,LOC103477709 coding upstream 83510 25675710 ~ 25698512 (+)
efhb efhb,LOC107671426,LOC107688256,LOC107743149 coding upstream 469724 25300259 ~ 25312298 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding downstream 108544 25897222 ~ 26069532 (+)
LOC122360056 LOC107671413,LOC107733030,LOC107568859 coding downstream 332182 26120860 ~ 26125250 (+)
si:dkeyp-97a10.2 LOC107688197,LOC107568877 coding downstream 336698 26125376 ~ 26130807 (+)
dhdds dhdds,LOC107688271,LOC107671399,LOC106582847 coding downstream 416812 26205490 ~ 26211403 (+)
LOC122360074 LOC107564102,LOC107688192,LOC107707652,LOC107552518,LOC107671417,LOC107726713,LOC107564101 coding downstream 489738 26278416 ~ 26282550 (+)
G116143 NA non-coding upstream 50371 25731186 ~ 25731651 (+)
G116137 NA non-coding upstream 79489 25701483 ~ 25702533 (+)
G116136 NA non-coding upstream 80593 25701216 ~ 25701429 (+)
G116101 NA non-coding upstream 458280 25292211 ~ 25323742 (+)
G116120 NA non-coding upstream 473091 25305761 ~ 25308931 (+)
G116293 NA non-coding downstream 184985 25973663 ~ 26074410 (+)
G116294 NA non-coding downstream 281177 26069855 ~ 26073277 (+)
G116300 NA non-coding downstream 316340 26105018 ~ 26178239 (+)
LOC122359920 NA non-coding downstream 428255 26216933 ~ 26226095 (+)
G116330 LOC107719312,LOC107671449,LOC107552529,LOC107552511,LOC107552527,LOC107671451,LOC107671448 non-coding downstream 452159 26240837 ~ 26260495 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other upstream 3615 25718520 ~ 25778407 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other upstream 227215 25552863 ~ 25554807 (+)
G116057 NA other upstream 724854 25003262 ~ 25057168 (+)
LOC122360598 NA other upstream 949404 24773819 ~ 24832618 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other upstream 1959576 23815924 ~ 23822446 (+)
hmgn2 NA other downstream 424054 26212732 ~ 26215779 (+)
G116445 ubr5 other downstream 1052702 26841380 ~ 26842025 (+)
G116459 LOC102223539,LOC107092448,LOC103472369,LOC102305030,LOC102207943,LOC100703061,LOC104937165 other downstream 1106760 26895438 ~ 27171468 (+)
cep72 spire1,LOC107677663,LOC107659090,LOC107729800,LOC107565753,LOC107601988 other downstream 1373523 27162201 ~ 27213635 (+)
G116460 NA other downstream 1375158 27163836 ~ 27168738 (+)

Expression


Co-expression Network