LOC122360728


Basic Information

Item Value
gene id LOC122360728
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18650773 ~ 18653605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252834.1
GTGTTAGGTATActtttggtgtattttatttattgtagttttattaaatgtatttattgtgcaaAAAGTCTGAAGCATCTATAATGTCAGtggataattaaaaacaacCGAGATgtaaacttaaaggaatagttcactcaaaaacaaaaatactgtcatcatttactcatcattGAATAGCTCTAAATCTGGAtgaaggaagatattttgacaaAGTTAGTAACCAGGCtcttttgggtcaccactgacttcaaTAGTAGGaaagaaatactatggaagtcaatggtgaaaCAAAGCAGCCAACacattttcttctaaatatcttcctttgtgttcggcaggacaaagaaattcatacagactTTAAACTACTTAAAGTTTGTCTCACTCCAGCCATTCTCTGGATCATGTTGCTGTTTTTTGATGGACAATACTTCGCCTGCGCAAAGACTTCATGGGAAGGACTGACGGTTCACACGGATATAACTGCTTCAACAACCTGGTGTCAGCCTTTAGTCACAGCTGACAACACCACAGAAAAGCAAATGGCATTTTTTAGCTATCGAAATAATTCTCAGATAGTGGGGCTGTGCATACTGCTTCTGATGTCAATGCCTCTGATTTGGATGGGAATTAGGAAATGgcaatacacacaaaaaagaaacaaagaactTGATAATGAACAAATAGAAATGGTGGATTTGAGCCCTTCGCCCCCTCCTGACAGTGCTTCTACAATTGTGGATCACAGTAGAGATGATTTTTAGTACTGGacatgactttatttttatagtaaaaaatttttttctcGATTCAAAAcctcatatttaaaattaatataattaaatacagtatgaataaatgggaaaacgttttatttttttatacttgtaACATAGCTAAAATTAGTATTTGTGCAACAAAATCAATCAACTTTTTGTTACAAACTGCTGACTCTAaccatattttacaattttttaatgaaactgtgtcatattgcatgtttttacTTTAGCAACTGTCATGTAGAGAAACAAACCACTTCCTGTCATTTTCAATAAGGTCATACTTAATTCTGTTTTTGAACTACTTTcactttaaattatataaaatctttatataGTCTTTCaattaaatggcaaaataaaataaaaaaacaaccacgTTACTTAACTGTATACTGAGTCATaatctgataaaaaaattagGGAACTTCATGAACTGGTGACTTCTTGAACTTAAAGCAAACACAAATCCTACAGTTTTCTCAGGAATTAAATCCAACTATCAgttaatacataatttattcGCCCTTGTGTTGACTTGGCAAGTTTAAAACGGCAAGAGATGagttaacaacatttttcttttgatttgatgCTTCAATatagaagaaatattttttaacagctTGGTCCTTAtataaaacacagcatattACGTCCTCTGTATATCTTTCTTTCGTCACTCAGATTGTAGTATTTTGCCACTCATTTATAGTGCTATCCAAGTGTCTATTTTACAGTCTTTTGAAACACTAGAAAGTCAGATTTCACAACCAGAGCTTATCAAAAAGAGTTTACTAAGAAAGATATGGAGATGTTATGAATTTCTCTTGCATCACACAAAAGTCAGCAGTTTAGTTTTTATACCTTTTGACAACActgaaaagcaattttttttttcgatttttgtcaaatgctttaaaaggtCTTGCAAACATGCTTTAAACATGCTGGATCTGAGGTGTGTGCACCTACTCGTATAAAGTGTTGCCACCAAGCAGCAGGAACCGAAGAACTTGAAGAGTAACAAGTGGAAATGGACGATTCTGGTCAAAGGTTACTTATCACTCATGAAAGATCTTCATTAACGGAGGATGTAGACAGAGTAGTTttcaataaaaatcatttaaaccaTCACTTATTGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252834.1 True 1933 lncRNA 0.33 3 18650773 18653605

Neighbor

gene id symbol gene type direction distance location
LOC122360632 LOC107672171,LOC107552811,LOC107724789 coding upstream 38301 18608982 ~ 18612472 (+)
ndrg1b ndrg1b coding upstream 53949 18592268 ~ 18596824 (+)
scxb scxb,LOC107714619,LOC107704851,LOC107724780,LOC107672140,LOC107552813,LOC107576100 coding upstream 108136 18539263 ~ 18542637 (+)
fam210ab fam210ab,LOC107587812,LOC107704893,LOC107741733,LOC107723107,LOC107671697,LOC107598002 coding upstream 411448 18232044 ~ 18239325 (+)
mc2r LOC107704892,LOC107741732,LOC107587907,LOC107598023,LOC107723103,LOC107672129 coding upstream 428837 18221031 ~ 18221936 (+)
LOC122360004 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding downstream 18354 18671959 ~ 18673711 (+)
LOC122360773 LOC107666789,LOC107600495,LOC107705096 coding downstream 29714 18683319 ~ 18684515 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding downstream 50798 18704403 ~ 18751686 (+)
LOC122361002 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding downstream 108659 18762264 ~ 18779383 (+)
LOC122360014 apoa2,LOC107728486,LOC107688286,LOC107726689,LOC107592191,LOC107726687,LOC107671415 coding downstream 328484 18982089 ~ 18983105 (+)
G114106 NA non-coding upstream 28367 18516618 ~ 18622406 (+)
G114104 NA non-coding upstream 88862 18561280 ~ 18561911 (+)
G114103 NA non-coding upstream 89804 18560214 ~ 18560969 (+)
G113988 NA non-coding upstream 273132 18320745 ~ 18377641 (+)
G113969 NA non-coding upstream 366009 18284154 ~ 18284764 (+)
G114172 NA non-coding downstream 10223 18663828 ~ 18664762 (+)
G114175 NA non-coding downstream 14240 18667845 ~ 18669187 (+)
G114132 NA non-coding downstream 113013 18766618 ~ 18888286 (+)
LOC122360693 NA non-coding downstream 167912 18821517 ~ 18825388 (+)
G114299 NA non-coding downstream 323946 18977551 ~ 18979872 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 803363 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 913291 17732604 ~ 17737482 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 1243577 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 1738892 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 1826790 16767060 ~ 16823983 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other downstream 21955 18675560 ~ 18680093 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 104700 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 155139 18808744 ~ 18821136 (+)
LOC122360132 NA other downstream 173649 18827254 ~ 18841584 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other downstream 544199 19197804 ~ 19253046 (+)

Expression


Co-expression Network