LOC122360959


Basic Information

Item Value
gene id LOC122360959
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20009553 ~ 20010093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252843.1
AACTCTTGGCCTTGGTAattaatgtgaatattttgaatGCTGATTTTCATGAGAGATTTTTGTGTCAGATACAAACGTGTATGCCAAAGTGAACGTTTGGCAAGCACATCACAAGCTCATTGTCTTGATCCACAactaaaacttttctttttttaatGTAGCTAGCTATGAAAATGCTGACGGTTTAACAAACTCGATCAGCAAGTTTCTTTATGAAAGCTGTTCCATGACTGTACTAGGTACACGAGACTTTGCATTCTCATACCACCGTTCAAAAGTTGGCtggtacaattttttttaaatgcgttgTTTCTTATGTTTACCTGGACTGCATTTGGTCaacatttgaacagtaatgttgtaaaaaaaaaaaaaaaaaaaattattattttatttata

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252843.1 True 399 lncRNA 0.33 2 20009553 20010093

Neighbor

gene id symbol gene type direction distance location
zfpm2a zfpm2,zfpm2a,LOC107592441,LOC107719156,LOC107556951,LOC107666743,LOC107714317 coding upstream 144459 19726156 ~ 19865094 (+)
rims2a rims2,rims2a,LOC107666746,LOC107728483,LOC108438094,LOC106919946,LOC106962152,LOC107556969,LOC107095553,LOC108256727 coding upstream 366067 19499281 ~ 19643486 (+)
dcaf13 dcaf13 coding upstream 511826 19491155 ~ 19497727 (+)
LOC122360535 LOC107728462,LOC107666770,LOC107592443 coding upstream 521761 19483949 ~ 19487792 (+)
zmp:0000000951 LOC107592442,LOC107728471,LOC107666810,LOC107709755,LOC107556960,LOC107666812 coding upstream 525663 19480366 ~ 19483890 (+)
zmp:0000000930 zmp:0000000930,LOC107719165,LOC107666769,LOC107592532,LOC107686330,LOC107714340,LOC107556967 coding downstream 24039 20034132 ~ 20036138 (+)
psma2a psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697 coding downstream 31443 20041536 ~ 20044792 (+)
LOC122360280 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding downstream 35195 20045288 ~ 20055412 (+)
LOC122360281 LOC107666827,LOC107592432,LOC107719140,LOC107686285,LOC107714336,LOC107556964 coding downstream 45547 20055640 ~ 20060794 (+)
washc5 kiaa0196,strumpellin,LOC107666741 coding downstream 52683 20062776 ~ 20074718 (+)
LOC122360931 NA non-coding upstream 289624 19702725 ~ 19719929 (+)
G114558 NA non-coding upstream 327101 19682140 ~ 19682452 (+)
G114556 NA non-coding upstream 329867 19679383 ~ 19679686 (+)
G114520 dpys,LOC107728457,LOC107686378,LOC107666745 non-coding upstream 360689 19647904 ~ 19648864 (+)
G114379 NA non-coding upstream 700339 19308264 ~ 19309214 (+)
G114582 NA non-coding downstream 6617 20016710 ~ 20018171 (+)
G114578 NA non-coding downstream 11636 20021729 ~ 20078782 (+)
G114585 NA non-coding downstream 16748 20026841 ~ 20029632 (+)
G114589 NA non-coding downstream 28481 20038574 ~ 20040588 (+)
G114593 NA non-coding downstream 69780 20079873 ~ 20082046 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 361747 19643829 ~ 19647806 (+)
G114382 NA other upstream 680790 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 716672 19283761 ~ 19292881 (+)
fxyd11 NA other upstream 726038 19280383 ~ 19283515 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other upstream 756507 19197804 ~ 19253046 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other downstream 209551 20219644 ~ 20227077 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 257448 20267541 ~ 20304684 (+)
siglec15l NA other downstream 757185 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 1839896 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 1873816 21883909 ~ 21921531 (+)

Expression


Co-expression Network