CI01000001_00105105_00108304


Basic Information

Item Value
gene id CI01000001_00105105_00108304
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 104255 ~ 109844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00105105_00108304.mRNA
AGTTGTTTACTCCTGAGCTCCGGACAGGACCATAGGGCTGGACAGAGGAAACATTTAAGATCCAATACGCAGGACTTTTACGTCACGCCGTGGGGAACGAACCTCTGGGGTCTTTGCGCTGTTACATGCTGTTCGAGTGCAGGAGCTGTCAAAGAAGGAGGTGGTACTGAAACAAGAGTGATCTTGATTTAAGCCACAAACCTGTACTTGAAAACCATACTCATATTCTGGAGCGTCAGTTCATACCAAGCACATGAGAGGGAATTACTGGAGGAACCAATAATACGATTTAACTGGTAAGGATTAAGAAAGCTTGTAGACAAGACTGGAACAGAAACCTCCTCTTTGAAACCTTTTAAAGTATGAAATTATTACTACCTGTAACTCTTTTGAAGCTTTTTAACTTTTCTGTGATCTTTTTCTGGGCTGACAACGTTATACAACATTAAGAACCTTGCAGCCAAACTGGTCACACTAAAAGCATTCACATACGTACGTGCATATACTTGCTAAGAAAATACTAACAAACAATATATACTAAATATATAAATATTTTATGCAACTGTCTGTAAATACAGGAGTATTAGTAGTATTACTATTGTGATAAGTTACATTTACATAAAGTAAGTGTGCATGCATGTTGTAATGTAAACAGATAGACACTTACTCTATGTCTTTTTAGTTTTATGACACATAATTGCAAAGGGTATAAATATCCCTCTATGCTTATGTCATATGGCGGTACATTCTGGCAATTTCAGGAGTTAAACTGGGTGTCAAGTTCCTTGACGGCAGAAAATTCCACCCCTAACACCCGCCATAAATCAAAGCTGTGTTACAGAAAAACTCAGTGACGTTACCATGGAAAGGATGCAACTATTCCAAGCTCATCCAAGTGGGTAAAAGGTTCCGCACTTGCTTGGAACTTTGACCTCATCCTAGCCTGAAAGAAGTGGCGTAACCTCATAGTTAAAGATCTAGACTGGCAGTAGGTGGAGGTTCCCATTTTGCAAGGGGCAACCAATTACCCTTTACTATTGTGCCCTTGATCAAGAGAGATCATGTTACACCAGGGAGACTGTCCATGTTATAAAACTGACTTAAGAATCCCTGAAGTCCCTTTAGGTAACTTGAGCATGTCTAATGAAGTTGGTGTGGTAAAGAACGTGCTGACAATTTTGACAGTTAAGGGCTGGTTTGAAGGACATGGAATGCATATAGAAATGAGTCAAAGTTTTAAAGCAGGTGTCCAGAGCAAATAGCTGGGATTTTGTTTCCTTCTATAAGTCTACTTGGATGCAATTCAATCAGGAAGACTTCACTAATGTTTAGATTCATAACACCTTTGAACTTCAAAGCAAGCCACAGTTGACACTGTAAAATGTATTTACTCGAGACATTTAGGATAGGCTGTTTCTCAATGATGAATGTCTTTTTTGTCTTCATAGAGGTATTGGTGGACTTGCCAATGTGGTCACTCCAGTGACCTTTCAGGAATTGCAGCATAAGATTCTGAGCACAGACAAACACTCGCAAAAGAATGGCCGCATTGGAATTGCACTGTGGGCCGGAGCCTGGGAGTTGTGTGTGGGGTGGAGAGAGAGCTAACCTGCTTGATAGTTTTGACTCTGAGATGCAGGAATGGGAAGATCAACTACAGGACATGCAGAGGAAGATTGAAGAGGTGAGCAAAACATGCTTTGCAACTGCTGAGTTTGTCTCTAATATTATGATTGTATTTCAGTTGTACAATGAGGTCAAAGCAAGAAGAGAAGCCAGCGAAAGCGGCACAAACAATGTCACAAACAACAAAAGCCTGGACATTACTTTGCTTCCTGTCAACTCTCATTATAGATACCAGGCCAATGGTTATCATGAACCCCATGGTCACCCCAACAACAACTTCCCAATTCGTCAATGCAATGAAGTAAGAGCAGATCGTTCAGTTATGCAAAGCCTTGGGTTTCACCACCCCAGTGATTACTATAATGGCTCCAACAATTCCTCACTTGATTCCCTGAGCAACGGCAGCCATTATCCTGCCAGTTGTCATGATCTTGAAAAACAAGATGCCACCCTAGACATCCTCAATGGATATCTCCAACAGGGCCCGCATTTTGGAAAGAACTTAGGGAATCTTAGAACCCCAAATGCAAACCCCAAGGTATATCCAGTTACACACAGTTATCAAGATAGCATGAAGACTAGCCTGGTGACAAACAGGACTGCATCGTGTGTAGTTCAGGATGAGTTTGAGGAGGCTGAGAACAAGAAGAACAAGAAATCAAGTTGGGATGACTCCCAAGCCCGCCACGTTAGCTGGAAAGACCCAGTTTCATCAAACGAGCTTCCCCCTAAATATTCAGCTTCCAAACTGGCAGTCAGACAGAGAGATGCTTCTCCTGTAACCCCTCGTTCCACTTACCATGAGTCATCACAACAACCTGACAGGAAGTGCCTCTTGCTTGACAGGAAATCTGGCAGCCCATCAGTGTTGCGTAAGTTTGGTGCCATGTTGCAGGAGAACGAGGGGAAAACCCTGATAGAGGATGGTCTTGTGACCACAGTTGTCTCCACTGAACCTCCAAGGCACACCAGCACTCCCATTTGCCAGAGCAAGTTTGACGCCAAGCGGGCATCCACGCGTGCGCCCGTCCAGAAATGCCTTGCAGACTGTGACGTACTGGTAGCAGAACTGGAGCCCAGCCAGGAGCCTTGGGCAGCTGGTCCTTCTAGACATCTCCTGAATGGAGACAGAGACAGTGGGAGGGGTGGTAGTACTCTTGAACAGTATGGCTTGGCCTATAACTTAAGCCCGTCACAGTCTCAACTTAAATCGAAGTATCACAAGGCACCTCAAGGGCCTAAAGCCAACAAAGCAGGCTTCCAGGGTGAGAACCTATTCTCTGACTACCAGATGGTGGAGAGGATTCTGGCAGCAGGATCTCAAAACTTCAGGAAGATACACACAGGGCTTGATGTTGATACAAGACAGGGAAATGACAACTTGGAGCAACTTCTAGAAATGATGGAAATAGAGAACAACAGAAGTCAGAGGGTCACATTCACCCAGCAACTGGACACCAAGCAGGTCAACCATGAGTTGTCTCCTGCCCCCAGCAGTAGCAATTTTTCCCGTCCTGCTAGACCAGCCAATCAACGTCGTCCATCAAGGTGGGCAAAGCAGAACCCGTCAAGCAAAATCGCCCACACATCCTGCCCACCAAGCCCTGGCCTGAAAGCCAAACAGTTCTTGAATTCATATTTCCAGCACACAGAAACTGTGATCATGTGACCAGGATAGAACAACCTTGAATGGACACTTTAAAGGACATTTTCATAGACAAACCTTTGACCTTTTGTAGAACACAATCTACTTTTTTTGTATATAACCACCACCACTTCAAAGAACCTTATTGCAGCCCACTAGGATGGCCTGTGATATTTTCATTAAATAACTTCAAAAGGATACTGTTTTCATTTAACTCTGTGCTGTTTGAAGTGCTTTGGAAAGTAACTCCAGTGGAAATTCTCTGACCTGGTGAACTTCTGTGCCTATGAACCTTTCATTGCCTTTTTCTCTTCATTTCTTTCTGTCATTCTCATTCAATTTTGTATTCTTTTATTCTTTTTTCTATTTTCCTGAGTGCTTTGTGTACACTGCAGTTCTTTTGGTGCCATGTAGGGCATTTTTTTGTAACCATATAAGCATGTATGCAACAAGCATAACATATTTAAGCATACATGTCAACGAGTTATTGAGCCTTCTCTATTATGCATTACCTGTAAAGACGTGTGCAAATGTTTTGATGTTCTGTCAAAGTCCATTTCAGTACTGCATTAGTGCTTCATAATATTGACATGTAGAGGTCATTACGGGCTCATAATCTTTTTATAAGCCTTATTTGACTGCGCCTGACGTGGGCTGTAACTACGCGGTGCATGGCACCTTTCTGCGGGAACATGTCTGCATTCTCCAGCCTTGTAAAGAAAATCCTTTAAGTTCAACATCTGTGAAGAGTAAATTATATCTTTTGACCATATTATAATGAAGAAATGCTTTGGAATGTTTATTTAATGTTGTGATATGATCCTTACAAAAACGTGATGCTTTTTGTGTTTTTTTTCTTTCTCAGTATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00105105_00108304.mRNA True 4145 mRNA 0.42 5 104255 109844

Neighbor

gene id symbol gene type direction distance location
CI01000001_00001500_00064341 CDH24 coding downstream 38679 708 ~ 65576 (-)
CI01000001_00113458_00118362 NA coding upstream 2085 111929 ~ 118447 (-)
CI01000001_00124107_00131285 ELOVL4B coding upstream 13215 122814 ~ 131380 (-)
CI01000001_00192545_00195828 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding upstream 82087 191931 ~ 196831 (-)
CI01000001_00218182_00220017 NA coding upstream 107813 217657 ~ 220116 (-)
CI01000001_00222940_00227735 NA coding upstream 112956 222800 ~ 228007 (-)
G12846 NA non-coding downstream 5350 98578 ~ 98905 (-)
G12845 NA non-coding downstream 6436 97338 ~ 97819 (-)
G12844 NA non-coding downstream 7057 96898 ~ 97198 (-)
G12842 NA non-coding downstream 9679 94121 ~ 94576 (-)
G12841 NA non-coding downstream 10169 93784 ~ 94086 (-)
G12856 NA non-coding upstream 44123 153967 ~ 154280 (-)
G12859 NA non-coding upstream 55109 164953 ~ 166160 (-)
G12866 NA non-coding upstream 68931 178775 ~ 179035 (-)
G12868 NA non-coding upstream 75012 184856 ~ 185057 (-)
CI01000001_00238241_00249437 NA other upstream 136161 238241 ~ 249437 (-)
CI01000001_00362143_00378213 NA other upstream 257398 361614 ~ 378213 (-)
G14104 NA other upstream 1653825 1763669 ~ 1771468 (-)
G14219 NA other upstream 1884366 1994210 ~ 1994898 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021936 CR354556.3 non-coding NC_007134.7 CM002907.2 40477220 ~ 40480582 (+)