CI01000001_00231916_00237164


Basic Information

Item Value
gene id CI01000001_00231916_00237164
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 231155 ~ 237540 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00231916_00237164.mRNA
CCATAAAAAGGAGGAAAAAAAATAATAAAACATGGAAATTAAACAGCATATTTGTTTATAAATTCTCTTGCATGTGAATTTTCATTCTCATAGTTTCTCCTCTTTCTAATTTTATGAATCGTTCTATTTAATAACTCGCTTAAAGTCGAACATCAAAGAGTTGTCCTTGTTCTGACAATCATCAGAGATAAATATAAGAGTAACGGACAATTAACTGTACTACAATTTAACTTAATAAAGCCTAATAATGCAATATTATTGTATGTGTCAGAGCTAATTTTGCCTTAAAATTCCTTATCTAATCTCTTTGTTGAAGGGAGCTTCATTCCTTTAATTGTATGTAAAATAAATTATTTTATTATACGGCTCTCGGACCAATCGCGGCACTGCATAAAATGCAAAAATCATTGTCCTACTCATTGCTCTCTTAAACAATGTAACAAGATTAACAAACAATAAGTAAGAAATATGCAGACATGCTTACAGAATGTTTGTTTTAACGTTAAGATATAGGAATAAATAAAGTAAATTCATCAGTTTTATGACTAATGTAAATGTCTTAGACCCGCTCTGTCAGGAAACTAACAGTAAAATGACTCTGCTTAGTGAAAAGTTCAGAACAATTAAAGTAAGATGTTAATTTGTCCCATTAATTCTCTAAAAGAAACCATTAAAATTAACGTGTGATTCAAAAGCCTTTGATCCCTTTCTTGAGAGCACAATTCTTCACTCTTTTGCTTTGAGCAGTGGATGGGGTGGAGATGGAGATGAACTATAAAAATCCCGTCTACTGTGGAGACAAACAACAGTACGATCAACGAGCTGGTTATAGCAGGACTTACTGTTCACTTGCTTCAGTAAATCAAGTTCTCGGTTCAGTTACTCTTGAACGGACAACCACTGAAACATCATGCCTTTTGTATACAACCCATACAAAAACCTCTGCACCGTCGGCCGTTTCCCAGCCATTAAACTGCAGGCGGACCACTGCAGGAGAAAAACATGCTACACACCGGTTTATCCTTACATTAACCCTTGTCGTTGTCGCTCCATGCCGTGATTATGAGACTAAGGAAGTTGTCATCAAGGAGTACATGGATGATTGCACTATCAAACAAAGCTGTGGTAGTGATGAAGCTCTCCTCCGGGTGACTAAAGTCGATCTACTCAAGTGCAGGACTGGACCGAATCGTAAGGAGCATCACACACATTGTTTCCCTGATGATCACCTCATCGTCCGCAGGGGACAGTATTTCAATATGTGGGTTGATCTGTGCCGTCCCTTCAATCCCAGTTGTGACAAACTTCACCTGGAGCTGAAACTAGGTCATGTCCCATCCATCCGGGATGGAACTTATGTGATCGTTCCAATTGTGGAAGAATTCAAGAAAGACTGCTGGGGGGCAAAGATTGTCGAAAAGTGTCAAAACCGAATCAAACTGTCTGTGCACTCACTTCCGACTGCTTGTGTTGGACGATACCAACTCAGTGTCGTGACTCACTGTCAAGGAGGAAGATTCACTCTACCATATGTTCCTGACAATGACATTTACATGCTGTTCAACCCCTGGTGTAAAGATGACTGTGTGTACCTGAGTGACGAGGCGGAGAGAGTTGAGTATGTGCTGAATGACATGGGCAGAATCTACTATGGAACTAAACAGCAGATTGGCTGCAGAACATGGAACTTTGGTCAACTCACTCAGGTGCATGGATTCGCCAACATTGCGGTCAAACAGCACTGTTAAACCAATCAAATAACCAAACGAGAAGAAACGTCAAGGCTCCACTGAACAGAAAGCGCTCACACTGAATTGATTTGCAGAATTAAATAGCATCTATTAGTTTCACTTTACCTACAAGCTGTAAACCTTAAACTAATCATGATCCAGGAGGCTTTATGCCAGACATCTTAATGATATTTTCCTCTCTTGTTAAGTAGTATTTTGGGAGATGGCATTTGTGGGCTTTACCTGGTTTGAGAGATTACAAATGTTATACTGAATAATCATTGATCATAATCAAGTTTATTTTTCCTTTTCAGTTTTTTTTTCATCGTTTAATTGCTTTCAAATAATTGTTTCATGGTGATGGTTACTCTGTCCTGTGTAGCTTCAGCATCAA

Function

NR:

description
transglutaminase, skin-type1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00231916_00237164.mRNA True 2124 mRNA 0.39 7 231155 237540

Neighbor

gene id symbol gene type direction distance location
CI01000001_00205299_00213625 TGM1L3 coding upstream 17197 205299 ~ 213958 (+)
CI01000001_00089680_00091054 RNF146 coding upstream 140040 89680 ~ 91115 (+)
CI01000001_00337674_00339265 NA coding downstream 99741 337281 ~ 339350 (+)
CI01000001_00343451_00343828 NA coding downstream 105911 343451 ~ 344399 (+)
CI01000001_00351249_00352199 NA coding downstream 113011 350551 ~ 353522 (+)
CI01000001_00353909_00354838 NA coding downstream 116369 353909 ~ 354838 (+)
CI01000001_00400604_00401694 NA coding downstream 162885 400425 ~ 401924 (+)
G12583 NA non-coding upstream 25167 205672 ~ 205988 (+)
G12581 NA non-coding upstream 26424 204515 ~ 204731 (+)
G12579 NA non-coding upstream 28178 202771 ~ 202977 (+)
G12570 NA non-coding upstream 46002 184902 ~ 185153 (+)
G12569 NA non-coding upstream 46588 183448 ~ 184567 (+)
G12588 NA non-coding downstream 5377 242917 ~ 245117 (+)
G12604 NA non-coding downstream 45995 283535 ~ 283735 (+)
G12606 NA non-coding downstream 48519 286059 ~ 302497 (+)
G12611 NA non-coding downstream 65607 303147 ~ 303452 (+)
G12627 NA non-coding downstream 120609 358149 ~ 358382 (+)
G12614 NA other downstream 71604 309144 ~ 310941 (+)
CI01000001_00483853_00488761 VWA1 other downstream 240846 483853 ~ 488825 (+)
G13051 NA other downstream 806173 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1430480 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3378708 3618075 ~ 3621451 (+)

Expression


Co-expression Network