CI01000001_00305883_00333574 (FYCO1A)


Basic Information

Item Value
gene id CI01000001_00305883_00333574
gene name FYCO1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 305491 ~ 333798 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00305883_00333574.mRNA
AGAGTTTCGTGAAAACATAATGTACAATCAACCCTAAGGATGAGCACTAGTAGTGATGCTTTACATAGCAAACACCACAGAAAATCACTGATATTAATGCTATATCATGCTTAAATTAATATAACGTGCATGTCAAATGCTAGTTATCCTTTGTCACTGTGATTCTTTTACTCAGCACACTACAGATGACCTCTTGACCCCATTGGCTGGAAACTAGTCAGACCATGGCCGCTGGTGCTGCAGTTGGGGAGGGTCAGATCCAAAGGATTATCAGAGATCTGCACGATGCTGTATCAGAACTCACAAAGGAGTATAAAGAGAACGGCGAGCCCATTACAGATGACAGCTCCAACCTGCACAAGTTTTCCTACAAACTGGAGTACCTGCTTCAGTTCGACCAGAAGGAGAAAACAACATTTCTGGGGTATAGAAAAGACTACTGGGATTATTTCAGCGACTGCCTGGCCAAAATCAAAGGAGCAAATGATGGAATCCGCTTTGTTAAATCAATTCCAGAGCTGAAGACGTCTCTGGGTAAGGGCAGAGCATTTATCCGTTACTCACTGGTGCATCAGCGGCTGGCTGACACTCTCCAGCAGTGCCTCATGAACCACAGGGTCACCAGTGACTGGTATAATTCCCGGAGTCCATTTCTCAAACCCCATCTCAGTGTGGACATCATTAATTACCTCTATGAGCTCAATGATGTTCAATTTGATGTGGCATCCAGGGGTCATGACCTTGACTCAGAATGGCCCACTTTTGCAAGGAGGACACTGGGAATGACAAGCTCTCCAAGTCACATGTGGAAACCACCGAGTCGTAGTTCCAGCATCAACAGTCTGGCCAGCACATACTCGCAGCAGGCCCATGAGTTCCCTGGGAGTCCAGACTTTGGACCTGGGCTTTTATCAGACATGTCTGTGCAAAACTCCAGTGGACTAAATGATTCTTCCATCAGCGCTATAGATGAACTCCGCCTGGAGCTGGACCAGTCTGAATTAAAACAAAGAGAGTTCCTTGACCAGGTACATCAGTTAGGCACCGAGGCGGGTGAACTCCGTGGGGTTGTGGTGGAACTCCAAAGGCAGCTGGATGTCTCTCTAGCTGCCCAAGGTAACCATCAGGAGCTCCAGCGGAACCTGGAGGTGCTAGCTGAGAGCGAACGGGCCCTATCCCATGAGCTGGAGGTCTTGAGGGGACGTGAGACCATCAGAGAGGCCTCTCATAAGGATCTCCAGGAAATGTTGGCAGCAGCAGAGCGTAAAAATGAGGAATTGATGGCAAGGCTTGATGGAGTATTGGATGAGAAAGGCCAGAGGGCGGCCAGTGACTTCAACTCTGCCCAGAAGATTCACGAGTTGTTAAATGAATTAAAAGAAGCTGAGAAGGGGAGGATAGATGCTCTGGCAGAAGGAGAAGAGAGGAGGAGACAGGCAGAACAACTAGCTGAGAAAGTCAGAATGAAGGATGAGGCACTCAAAGAGGCTGAGGTAAAAATGGCAGCTTGGATGGAGAAGGGTAAACAACTACAGACCAGGGCAGAAGAGCACCGTAACGTCATGGACAAACTCCAAGGGGCTCTTGCAGTGCGAGAGAAAGAGACCAGCAACCTGCAAAGGCAACTGCAAGATCTCCAGCGCTCTCTGGAAACTATGGAAAAGCAGGCCAAAGTGGAGAGGAAGGGAATGCAAGAGGATAAAGAAGAGCTTGAGAAGAAGATGAGTGGTCTGGAAGGGCAGCTGCAAAGATTGCGGACACATCTGAAGGCTAAAGAATCTGATCTTCTCGCCAGTACCAAGAAAGTCCAGTTTCTGGAGAAGGAATCGGAGAAGCTTAATAGGGAGAAACAGAATATGCTGGTGACCATATCTGAACTGGAGAACAGCACCAAAGAGCAGGCTAAAAAGATTGATGAATACAAAGATAGCTGTGCCATGCTTTTGGAGCAAAATGGCAAGCTCCTCCAGATGATGAACAAGAATGAGGACACCAAGAAGGAATTGCTTGAAAACAAATCTTCCCTGGAGAGTGAGCTGGCTGGATTGAGGGCCTCGGAGAAGCAGTTGCGAGCACAAATTGATGACGCGAAAGTGACAGTGGGTGAACGAGAGCAGCGGATGAGAGAGGAGAACAGGAGTCTGGATGAGAGGCTGCATAAGGCCAACATGCAGTTAGAGGAATCTGAGAGTTCAGTTCGCCAACTGGAGCTGGAGAACAAGGACCTCATGGAGGTTCAGGTCACTCTTAAAGCGGCTCTCACAGCTATGCAGGAGGAGATACGCAACATCAACAGCCAGATTGCTGAACTTGAGAAGAGTCTTGGAGCTGCAAAATGCAACGAGGAAATCCTGACCGCACAGCTTAAAGATAAGGATTCCCAACTGGAGGACCGGGAGAAGCTCTGTGAGGAGCTCCAAGGAAGGGTGGAAGAACTTGAAGGTCGGGAGAGGGATTTGGAAATGGAGAAGACGAAGGCAGAAAGAGCTTTCGTTAAACAAACAGAGATGATTAGGAGTCTTGAGGACCAGAGGAATGTTGCAGAGAAGGTCCAACTTGAGCAGAGTGCATATCAGGCTAAAGAAACCCAAGAGATGGCCTCAAAAGTGACTCTTCTGGAAGATCAGCTGGGATTGAGTGTGAAAGAAGTTTCTAGGCTTCAAGAGGATGTGCTCGATCTCAGGGCTAAACTTCACAGTGCTGTGGAGGAGAAGGACAAGACTCAAGCAAAGCTTGATGTCACTGAGGCTTCCTGTGCAGAACTGCGGACCTTGACTGAGCAATTGAAGAAGCAGGCAGAGGAGCAGAATCGACTGCATGTGAATGAGCTCCTACAGTCCAGTGAACGTGTTAAAGCCTTAACTTCACAACTGAACCAGGAGATATCTGCACACAAGAAAACAACTGGTGAACTTACTTCAGCCCAAGAGGAGCTGGTAGAGCTCAAGGCCCAGAATGAACGGATAGTCCTGGAAAACGCTGAGACCAGAGAGTGTCTCCACCGAGTCAACACAGAAATGGCAGAGCTGGGAATAACAATTTGCCAGCTCACCGCAGAGCGGGAAGAGGCCCGGGAAAGAATGGCTGCCGAAACCACTCGGATAAAAGAACTGCAACAGCAAGGAGTGAAGGAAACAGAGCGACTCAATGCCAGTTTGGTGGCTCTTCACCAGGAAAACTCTAGTCTACGTGAAGAGCTCCAGCAGACGGAGAAACTTTCAGAAACTGTGCTGGAAATAAAAGAGCTGCTGGACAAAACAGAGGGTGAGCGGGATGCTGCGCGAGAAGAGATCGCTGCAGTGAAATTTCAGATGAGCGCAGAGAACATGACTTTCAAGAACCAGATAAAGGGCGTGAATACAGAATACTCTCGTCTGATTGAGGAGAAGGATTCTCACATCACTGATTGTGAGACTCTGATACGTGAGAGAGAGTGTGAGACGCAGCAACTGCAAGAAAGTGTATCAAGTACCAAAGAGGCTCTTAGTGACGTACAGAAGGAGAGGGAAGAACTGAAGCAGAAATTGGATCAGGTGTTGACGGAGACTCAGAAACAGCATCTCCGGATGTCTGCTGAGCTGGAGGATCTGAGCCAAACCAAACTAAACCTGGAGGAACGGCTCATCGAACTTATTAGGGATAAGGATGCTCTGTGGCAGAAATCGGATGCTCTGGAGTTCGCACAGAAGCTGAGAGCGGAGGAGCAGTGGTGGCTGGTGGATAAAGAGGCTACACACTGCCTGGGCTGCCAGGGCCAGTTCACGTGGTGGCTGCGGCGGCATCACTGCAGGTTGTGTGGCCGTATCTTCTGTTACTACTGCAGCAACAATTACGTAATGACAAAGAACGCAAAGAAGGAGCGCTGCTGTCGAGAGTGCTACACGCAGCACGGTGCCGTAGTGGAAAGATTTACGAAGGCTGAAATCAACAGCTCAACAGAAAATCAACCACCACCCCACCCAAATGCTGCAGCTCAACCACCACCACCCTATATACCCACACCAAGAGTTACAGTAACAGATCCTGCTGAGAAACCGGATGATGGGGTGTTTGACATCATAACGGAGGAGGAAGTGAACGAGATCTATGACAGCGACTCGCGTACCACCACTGGATCACAGGAAGAAGGAGATGGAGGGCAAACTGGAGACATTAGCATATCAAGTGATGTGACCCCTGATGAACAGGAAGACATGGTCTCTACTGTACAGGATGCAGAAGTCACCCTTCTCATGTCAGGAGAACTAACTGCCTCTGTGCCTCTGGATATAGATGAGATTCTTCATTTCGGCGAAGGTTCCCGTGAGCTTTTTGTCAAGTCCAGCTGCTATAGCACCATTCCCATCACCGTGGGCGACCACGGGCCCATCATTAGCTGGGTTTTCTCTTCCGAGCCAAAGAGCATCTCCTTCACTGTGGTATACAGAGAGACACTCGACACACCTGTTGAGCAGGCCAAGGTTCTGATTCCCCTCACACGCTGTAACTCACACAAAGAGACCATACAGGGTCAACTCAAAGTCCGCAACCCAGGAGTCTACACACTCATCTTTGATAACTCGTTTTCCAGATTTCTCTCCAAGAAGGTCAACTACCACCTGACCATCGAGAAGCCAATCATCTACGATGGAAGTGACTTCCCTTAAAAGTGGCTTTGTGGTGGTGTGTAGCGTCCTCGTGTGAACGGTTTTTAATTTTTATTCTTATTCATTTCAGACCTGTTCCTGTGTGCCAAGGGTTTCTGTTTTCAAGTTTTATGGGCTAGTATAGTATTGGTTTTTATGTTTTACTGCTGATAGCACAGAGGCTATCTGTTGTGACCTGCGTTAAGTGTTATGGAAGGGTTTCTAAAGCACATGTACTCATTTGAAGAGGATTAGTTGCTGGTGATGCATCTTTTTTTAGTTTTTTCGTGTTTTATTTTCCTTGTGGATTCAGTGGATTTCACAAACACTACAGATGAACTCAAAGCGTCAGTGATATCAGCAGTTGAAGCTCACATGGGTAAACATGCAAAGATAAGACAATCTCAAATTAA

Function

symbol description
fyco1a Predicted to enable metal ion binding activity. Predicted to be involved in plus-end-directed vesicle transport along microtubule and positive regulation of autophagosome maturation. Predicted to be active in autophagosome; late endosome; and lysosome. Human ortholog(s) of this gene implicated in cataract 18. Orthologous to human FYCO1 (FYVE and coiled-coil domain autophagy adaptor 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00305883_00333574.mRNA True 5038 mRNA 0.48 16 305491 333798

Neighbor

gene id symbol gene type direction distance location
CI01000001_00238241_00249437 NA coding downstream 56054 238241 ~ 249437 (-)
CI01000001_00222940_00227735 NA coding downstream 77484 222800 ~ 228007 (-)
CI01000001_00218182_00220017 NA coding downstream 85375 217657 ~ 220116 (-)
CI01000001_00192545_00195828 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding downstream 108660 191931 ~ 196831 (-)
CI01000001_00124107_00131285 ELOVL4B coding downstream 174111 122814 ~ 131380 (-)
CI01000001_00362143_00378213 NA coding upstream 27816 361614 ~ 378213 (-)
CI01000001_00445369_00466166 TMCO4 coding upstream 111442 445240 ~ 466897 (-)
CI01000001_00493196_00498517 OTUD3 coding upstream 158967 492765 ~ 498517 (-)
CI01000001_00500347_00500698 G0S2 coding upstream 166285 500083 ~ 500698 (-)
CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding upstream 171956 505754 ~ 517386 (-)
G12921 NA non-coding downstream 22709 282555 ~ 282782 (-)
G12920 NA non-coding downstream 27202 278044 ~ 278289 (-)
G12873 NA non-coding downstream 93245 211309 ~ 212246 (-)
G12880 NA non-coding downstream 96133 209149 ~ 209358 (-)
G12878 NA non-coding downstream 101785 203492 ~ 203706 (-)
G12933 NA non-coding upstream 1927 335725 ~ 336033 (-)
G12896 NA non-coding upstream 25073 358871 ~ 359739 (-)
G12945 NA non-coding upstream 71533 405331 ~ 406159 (-)
G12946 NA non-coding upstream 79886 413684 ~ 413948 (-)
G12955 NA non-coding upstream 171051 504849 ~ 505048 (-)
G14104 NA other upstream 1429871 1763669 ~ 1771468 (-)
G14219 NA other upstream 1660412 1994210 ~ 1994898 (-)
G14228 NA other upstream 1722176 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1925591 2258442 ~ 2263103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location