CI01000001_00351249_00352199


Basic Information

Item Value
gene id CI01000001_00351249_00352199
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 350551 ~ 353522 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00351249_00352199.mRNA
TTACAAAAGGGTTCAAGTGGAACAATTACTTCAGATGTAAAGATCACAAAGCCACTTTAGCTTCCTCTGTGTATGAGAGATGAAAGGATCTTGAGGGTGAGGTTTGAGAAAGGATGTCACTTACCCATCATACAAAGATTAGATAGGTTTTTTAGCTTTCAGTTATTTTAGCTAGTTGATCTAAGGAACATGTAATCATCACAATGATGATATGCGTGTCTTGAGAAAAAAAGCAACGGTTTCATGTGACCATGGATGTACAAAGTTCATGAAATTCCAGTTAATTTTATACTAGAGATTGTGGTCATCTACAGCGGTTGGTAATGTGCTGTTCTGATCATCATTGTGCTCTACAAGGTCCAAGTATTTAGGTAAGTCATGCATTGTTTAGCATTTGACTAAGTTACTCGAGTTCAACGGACTGGTATAACTTCTTTTTCCCCCAATGAAAAGGCAGAGAGTGTATTTCTAAGTTGTATTAATAAGTTGTAAATGGAAGATTATTGGAGTATGTTACAAGAAAATAGTAGAAAATAGTCTGTTTCAAAATTTTAATTCAATGTGTAATATTTCTGAAATTTACTAGCAATTTCTGAGTAAAAATTATTTCAAAGTATTTTTTTTTCCTCAGCATACAAAGAGGAAAGAATTGAACGTGGACAAATCGGATGTGGTCAGTTCGTGATTGCAGAACGAACATGAGTGATGAGAATACAACAGACACTGACTACTACGACTTACACTACGAGGACCAGATGTGTAAGAAAGATGAAGTGGTGAAATTTGGATCCATTCTCATTCCATTCTTCTTCTCATTAGTTGTTCTGTTAAGCTGCATCAGTAACGGCCTTGTTCTGGTCATCCTGGCACTTTATGAGAACCTCAAATCCCTGACCAACGTCTTCATCCTCAATTTAGCGCTATCAAATCTGCTGTTCACGTTTGGACTTCCATTCTGGGCCTCGTACTACATCTGGGGTTGGACGTTTGGAGAAAGTGGCTGTAAAGCAGTGAAGTTTCTGTTCTATGTTGGCTTTTACAGCAGTGTGTTGTTCTTGACTCTCATGACCATTCAGCGTTACATGGCAGTGGTTCATCCTCTGTCTGACTGGGAGAAATGCAGAGGATTTTCTGTCGCTCCCTCTATCGTTTGGATCCTGAGCGGAGCGGTTTCACTGCTTGGTTCACTTCATAGCAAAGTTATACAACATTTTAATAGTACATACTGTGAGTATGGCAGTGTTCAAGTGAAATCTGGCATTGCTTATTTTCAAAATGTTTTCTTCTTCATTGCATTTATAATCATGGGTTATTGCTATGGCAGAATGCTTCGGACGATAACAAAATCACGGACCAATAAGAGACACAAGACTGTAAGTCTAACATTTGTTATTGTGCTGGTGTTTTTTATTGGTTGGGCTCCATATAACATTGTTATGTTCCTGAAATCATTGACTGATCAGCATATCCACCCATTCACAGACTGTACAGTAAGCATTAGACTCGACTATGCATATTATGCTTGCCGAATGTTAGCTTTCTCGCACTGTTGCTTAAACCCTCTGTTTTTAGTTTTTGTAGATGCAAGGTTCCGTAATAATGTACGAGCAATTCCAAAGAGGGTCTTATGTAAAGACTTAAGTCTATGAATAATCTGCTTTGGAAAGATAAATACTTGAGACAGAAAACAATAGCATTGAAAGAGATTGATGAATCTGGCAGCAGAATTGATCAAATCATTACTGGTTACAATTAACATATAATATTGGAATGCTATCTTTGTGTAAAAGCATGTGTTGAGCATTGTTGGGAAAAGTTACTTTAAAAAGTAATGCATTACAATATTGCACTACTTTACGAAAAGTAAACCTGGGCTGGGGTTGCTTGTTTGTTTTTTAATAACAACAACAACAAAAAAAGTTCAATTTTTGGCAAATGTCAAGGCCCTTTCACACCAAAAGCCTCAGGCTGATGGAAATGCATATTTACTCAAACTAACCTTTCAGCTGTGCTGCCTTTCTGAATTGAAGAAGAATAGGATACAGGAGGAGGAAGTTCAACGGTCTTTCTCGGTTTCTAAACCTAATCTAAAGTAATTTTTGCTTATTAGTATGGTTGAATTTGATCATTGAAGGTCAGCAGCAAAGACATTGGTTTATAAAGTGAGATTAAATACATAAAATATATTTGTGTAATTTAATATAGTTAATTATTACAGGTTTGCATAAAATTATGAAATTGTATTTCACAGTTTTTATTCATTTTGAGAAATACTGAATGTTTTCGTGCAAGTGAGATGAGTAAATGCATGTTCACATTTAGTCTTGAACTAAAATAACCATCATGTTAACATTTATTTGAAAAAGTAACTTAGATATTTTGTTGTAAATTGAAAAAGTAATGTTACATTATTAGTTACTTGAAAAAAGTTGTAATGTGTTGAGTTCATGCCAGCCCTGAATACACAAAAGGAAAATATGTTGTGACTAAAGTGTTACTGAATTTCTTAAATACTGCCACCCTAAAATTACTGTAAAAGAAATCACATGAGAACTGCCTGTGGAAAAATGCCGATTATGTAGTTTTGTTTTGATGCAAATGACTAGAAAAAAACGACATTTTCTTCTTTCACGTGAGAAAGTGTAAATTGTGGTCTGTGGAAGGAAGCACAGCGTCATCACTGGCCTACTAAAACAGGAAAACGGAAGAATACACAACTCATTTATGTTTGTTTTTACTTTTTAAGAGGTTAATAACAAAACAATATTAGCATGCTTGCAGCATATGAGATCCCTGCAACCATAATCACCTTCATAAAAACAACATACTTTTTAAATTAACTTAATTATGACATAAATGCATGATTTGAAAAACCATGTACAAAAAAAAGAAGCCATCAAGCTTTTTTCACTGTCCTGCTGTTGATTTCAAACTCAAAACAAAAGCAAGAGCTAGAACTTCTTAACATGGAA

Function

NR:

description
Xcr1a protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00351249_00352199.mRNA True 2972 mRNA 0.35 1 350551 353522

Neighbor

gene id symbol gene type direction distance location
CI01000001_00343451_00343828 NA coding upstream 6152 343451 ~ 344399 (+)
CI01000001_00337674_00339265 NA coding upstream 11201 337281 ~ 339350 (+)
CI01000001_00231916_00237164 NA coding upstream 113011 231155 ~ 237540 (+)
CI01000001_00205299_00213625 TGM1L3 coding upstream 136593 205299 ~ 213958 (+)
CI01000001_00089680_00091054 RNF146 coding upstream 259436 89680 ~ 91115 (+)
CI01000001_00353909_00354838 NA coding downstream 387 353909 ~ 354838 (+)
CI01000001_00400604_00401694 NA coding downstream 46903 400425 ~ 401924 (+)
CI01000001_00426295_00431004 IYD coding downstream 72543 426065 ~ 431232 (+)
CI01000001_00433013_00435064 NA coding downstream 79491 433013 ~ 435539 (+)
CI01000001_00436821_00439097 NA coding downstream 83299 436731 ~ 439752 (+)
G12611 NA non-coding upstream 47099 303147 ~ 303452 (+)
G12606 NA non-coding upstream 48054 286059 ~ 302497 (+)
G12604 NA non-coding upstream 66816 283535 ~ 283735 (+)
G12588 NA non-coding upstream 105434 242917 ~ 245117 (+)
G12583 NA non-coding upstream 144563 205672 ~ 205988 (+)
G12627 NA non-coding downstream 4627 358149 ~ 358382 (+)
G12618 NA non-coding downstream 5349 358871 ~ 359756 (+)
G12628 NA non-coding downstream 6447 359969 ~ 360217 (+)
G12629 NA non-coding downstream 19242 372764 ~ 373485 (+)
G12648 NA non-coding downstream 60974 414496 ~ 416841 (+)
G12614 NA other upstream 39610 309144 ~ 310941 (+)
CI01000001_00483853_00488761 VWA1 other downstream 124864 483853 ~ 488825 (+)
G13051 NA other downstream 690191 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1314498 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3262726 3618075 ~ 3621451 (+)
G15794 NA other downstream 4707696 5061218 ~ 5064704 (+)

Expression


Co-expression Network