CI01000001_00353909_00354838


Basic Information

Item Value
gene id CI01000001_00353909_00354838
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 353909 ~ 354838 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00353909_00354838.mRNA
ATGACTGAAGACTTTACATATCCTGATTACGTTACACCAGAAGACCAACTATGTCGCAAAGACGAGGTAGTGAAAGTCGGATCCATTGTTATCCCAGTTTTTTTCACTCTTCTGGTTGTATTTAGTTGCATCGGTAACATCCTTGTTCTGGTCATCCTGGTGCTCTACGAGAACCTCAAATCCCTGACCAACATCTTCATCCTCAATTTAGCTCTGTCAGATCTGCTGTTCACGTTTGGACTTCCATTTTGGGCCTCGTACTACATCTGGGGTTGGACGTTTGGAGACAGTGGCTGTAAAGCGGTGAAGTTTCTGTTCTATGTTGGCTTTTACAGCAGTGTGTTGTTCTTGACTCTCATGACTATTCAGCGTTACATGGCAGTGGTTCATCCTCTGTCTGACTGGGAGAATTGCAGAGGATTTTCAGTCGCTCCTTTCGTCATCTGGATCCTGAGCGGAACAGCTGCACTGTCAGTCTCACTCCGTAGCATCATCTTGCTACATGATAATAATCTTTACTGTGAATTTGACAGTATTGGAGCAAAACATGTCGCTATTTATTTACAAAGCATTTTTTTCTTGATTGCATTTTGCATCATGGGATTTTGCCATGTCAGAATGTTTCTGATAATCATACAGTCCCGAACAAAGCTGCGAAAGAAGACTATCAAACTAATATTCTGCATCGGCCTGGTGTTCTTCATCGGCTGGGCTCCATACAACATTGTGATGCTCTTGAGAATTTTGCAGGATTATGTTTTAACTCCATTCACAGACTGTAAGGTATCTATTCGTCTTGATTATGCATTTTACGCTTGCCGACTGTTGGCTTTTTCACACTGCTGCTTAAACCCAGTGCTTTATGCTCTAATTGGAGAAAGATTCCAGAAACATTTACGGATGATACTGACGAAAATGTGTCCAAAATAA

Function

NR:

description
Xcr1a protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00353909_00354838.mRNA True 930 mRNA 0.42 1 353909 354838

Neighbor

gene id symbol gene type direction distance location
CI01000001_00351249_00352199 NA coding upstream 387 350551 ~ 353522 (+)
CI01000001_00343451_00343828 NA coding upstream 9510 343451 ~ 344399 (+)
CI01000001_00337674_00339265 NA coding upstream 14559 337281 ~ 339350 (+)
CI01000001_00231916_00237164 NA coding upstream 116369 231155 ~ 237540 (+)
CI01000001_00205299_00213625 TGM1L3 coding upstream 139951 205299 ~ 213958 (+)
CI01000001_00400604_00401694 NA coding downstream 45587 400425 ~ 401924 (+)
CI01000001_00426295_00431004 IYD coding downstream 71227 426065 ~ 431232 (+)
CI01000001_00433013_00435064 NA coding downstream 78175 433013 ~ 435539 (+)
CI01000001_00436821_00439097 NA coding downstream 81983 436731 ~ 439752 (+)
CI01000001_00440891_00444667 HTR6 coding downstream 86053 440891 ~ 444983 (+)
G12611 NA non-coding upstream 50457 303147 ~ 303452 (+)
G12606 NA non-coding upstream 51412 286059 ~ 302497 (+)
G12604 NA non-coding upstream 70174 283535 ~ 283735 (+)
G12588 NA non-coding upstream 108792 242917 ~ 245117 (+)
G12583 NA non-coding upstream 147921 205672 ~ 205988 (+)
G12627 NA non-coding downstream 3311 358149 ~ 358382 (+)
G12618 NA non-coding downstream 4033 358871 ~ 359756 (+)
G12628 NA non-coding downstream 5131 359969 ~ 360217 (+)
G12629 NA non-coding downstream 17926 372764 ~ 373485 (+)
G12648 NA non-coding downstream 59658 414496 ~ 416841 (+)
G12614 NA other upstream 42968 309144 ~ 310941 (+)
CI01000001_00483853_00488761 VWA1 other downstream 123548 483853 ~ 488825 (+)
G13051 NA other downstream 688875 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1313182 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3261410 3618075 ~ 3621451 (+)
G15794 NA other downstream 4706380 5061218 ~ 5064704 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022587 CU657980.2 non-coding NC_007134.7 CM002907.2 39944652 ~ 39945578 (-)