CI01000001_00493196_00498517 (OTUD3)


Basic Information

Item Value
gene id CI01000001_00493196_00498517
gene name OTUD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 492765 ~ 498517 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00493196_00498517.mRNA
ATGTCAAGGAAACAGTCAGGAAAGCCCATAAAGGGAAACAGGAAGTGTGAATTAGAGAGGAAGAGAGATGAGCGGGCGGCCCGCCGGGCTCTGGCCAAGGACAAAAAGAACAGACCTCCAGGAGGGGAAGATGGAGAGGAGTTTGTCAGCTTTTCCAACCAGCTTCAGGCTCTGGGTCTCAAACTCCGAGAGGTGCCTGGAGACGGAAACTGTTTGTTCCGAGCTCTTGGAGATCAGCTGGAGGGACATTCGCGGGGTCACCTGCATCTGCGGCAGGAGACGGTTCAGTACATGATGACCCACAGGCAGGACTTCGAGCCCTTCGTTGAAGACGACGTGCCGTTCACACAGCACTTGTCAAACCTCTCACAGCCGGGCACGTTTGCCGGTAATGATGCCATCGTGGCCTTCGCTCGCAGCCAACAGTTGAAAGTGGTTATTCATCAGCTGAACAATCCATTGTGGGAGATAAATGGTACAGACAAGCCGTCTTGCCGTGAGCTACACATCGCATATCGCTATGGAGACCATTATGACAGCGTCCGGAAGATTGGAGACAACTCTGAGAGTCCGGCACATCTACGAATAGAGAGTCTGAATAATTCCAGACGCTTTGGAGATGGTCAGAAGGAGAAGTCGAGAGGCGCCTCTCCCTCGCGCTCTCTCTCTGAAGATGAAGAGCTGATCTTGAACATTCTCTGTGCCGACAGTCAATCAGACAATCTATGTCAATCAAATGCCACATCACAGACGTGCCACAGTGATTGGCTGGAGTCTGAACTGAACAACCAATCATCACAGAGAGATTCGGCCTCAGGGACGCACCCTTTATGTCAAGGCATGCAGGCTGAATGTAGTGAAATCATATCTCCAACAGAGGGCAGCATCTCACATAAACCCAAGCTCTCTAATAAACAAAGGAAAGAGCAACAGCGTCTAGAAAAGAAGAAACGTCAAGAGGAGAGACATAGACAGAAGGTTTTACAGGGCAAAGGGTCACATGACCAGAATCAGAATGGACCTGAAGCCGTCACTCTTGTGCCAGCGCTGAACACCCTGAGCATCTAGAGCGAATGAGAAACTTTAATAGTTTAAATGTACAGGAACTGTGGAGTATGATTGAGCGCATGAAGATGATGTGGAGATGTGTGGAGCTGTACGCTGTGCTTGAGATTGTTGGCGGCTGCATTTTTGTACTGAACATAGTCAAAGTTTAACCCTCATTAATGTCAGTTGAGCCATCTGAGCTCGGCCAAAGAACACTTGGATAGGGAACCAAAATATTGAGAGGAGGAAGAGTTTAAGATTAATGATGGGCCACTGTTTAAACCTGCTGGGGTATTTGATTGATTTGTTTAAAAAACTTTCGGTTCTGCTCCTACTTTCGGTTTTTGAAAACTGCTTAAAAATAGAGCATTCAAATAATGGATTTAAATCTAGCGTTTCATTTTCAGGCAGTTGGGCAACTTCATATTCTGCAGTGAAATTCTATAAATAAA

Function

symbol description
otud3 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination and protein stabilization. Predicted to act upstream of or within proteolysis. Orthologous to human OTUD3 (OTU deubiquitinase 3).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K13717 OTUD3; OTU domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00493196_00498517.mRNA True 1499 mRNA 0.47 7 492765 498517

Neighbor

gene id symbol gene type direction distance location
CI01000001_00445369_00466166 TMCO4 coding downstream 25868 445240 ~ 466897 (-)
CI01000001_00362143_00378213 NA coding downstream 114552 361614 ~ 378213 (-)
CI01000001_00305883_00333574 FYCO1A coding downstream 158967 305491 ~ 333798 (-)
CI01000001_00238241_00249437 NA coding downstream 243328 238241 ~ 249437 (-)
CI01000001_00222940_00227735 NA coding downstream 264758 222800 ~ 228007 (-)
CI01000001_00500347_00500698 G0S2 coding upstream 1566 500083 ~ 500698 (-)
CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding upstream 7237 505754 ~ 517386 (-)
CI01000001_00538192_00559082 MICAL1 coding upstream 39076 537593 ~ 559082 (-)
CI01000001_00580789_00602408 SRC coding upstream 80559 579076 ~ 602628 (-)
CI01000001_00636063_00642086 KCNG1 coding upstream 137525 636042 ~ 642379 (-)
G12946 NA non-coding downstream 78817 413684 ~ 413948 (-)
G12945 NA non-coding downstream 86606 405331 ~ 406159 (-)
G12896 NA non-coding downstream 133026 358871 ~ 359739 (-)
G12933 NA non-coding downstream 156732 335725 ~ 336033 (-)
G12921 NA non-coding downstream 209983 282555 ~ 282782 (-)
G12955 NA non-coding upstream 6332 504849 ~ 505048 (-)
G12963 NA non-coding upstream 106584 605101 ~ 606584 (-)
G12907 NA non-coding upstream 115703 614220 ~ 711316 (-)
G12997 NA non-coding upstream 319270 817787 ~ 818127 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 357840 122814 ~ 131380 (-)
G14104 NA other upstream 1265152 1763669 ~ 1771468 (-)
G14219 NA other upstream 1495693 1994210 ~ 1994898 (-)
G14228 NA other upstream 1557457 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1760872 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 3893797 4392314 ~ 4399804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021924 otud3 coding NC_007134.7 CM002907.2 39611688 ~ 39626681 (+)