CI01000001_00538192_00559082 (MICAL1)


Basic Information

Item Value
gene id CI01000001_00538192_00559082
gene name MICAL1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 537593 ~ 559082 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00538192_00559082.mRNA
GTCATCTAGCAGGCTCCAGGCCTCTCCCATCACAATGGCCAACCAGCCAGACTCTGTCAATCCCAGCCACAATTTTTTTGACCGTTTTGTCCAGGCGCAGACATGTAAAGAGACACAGCAGAACTTCACTGAGCTCTGTCGCCACCTGGAGCTCGACTCCAGGGACTACAAGCACTTCTACAGCAAACTGAAGGACAAGCTCAACTACTGGAAGGCCAAAGAGCTCTGGCAGAAAATCGACAAGAGAGCCGCCCATCCGGACTATGAACAGGGCAAGGCATGTCACCAAAACAAGTGTTTAGTGTTGGGTGCGGGTCCCTGTGGTCTCAGGACAGCGATCGAATTGGCCCTACTTGGTGCTCAGGTGGTTTTACTGGAGAAAAGAACCTCTTTCACCAGAAATAACGTCCTGCATCTGTGGCACTACACAATTAAAGACCTCCAAAACCTCGGTGCAAAGAAATTCTATGGAAGATTCTGCAGCGGCTCCATTCATCACATAAGTATCCGTCAGCTGCAGTTGATTCTGCTGAAGCTGGCCCTGATTTTGGGGGTGGAGGTGCACACAGGCGTGAGCTTTGAAGGTCTGATTGAACCATCAGGATCCACAGGATGGAGAGCACAGGTGTCTCCTAAGACCCATACAGCTGCAGCTTTTCAGTTTGATGTTTTTATTTCAGCTGGAGGGGGGAGATATGTGCCTGATGGTTTTAAAATAAAGGAGCTCAGGGGCAAGTTGGCCATCGGTATCACTGCAAACTTTGTAAACCGCCATACTAAACAAGAGGCTCAGGTGCAGGAGATCAGCGGCGTGGCCCGAATATACAACCAGAAGTTCTTTCAAGCACTTCAGTCTGAAATCGGCGTTGATCTAGAGAACATTGTCTACTACAAAGATGATACTCACTATTTTGTGATGACTGCAAAAAAGACAAGCTTGATTAAAAAAGGAGTTATAAAGCAGGACTTCTCTGATGTCGAGCAGCTGCTCGCACCTGCAAACGTCAACCAGGAGGCCCTGCAGGAGTATGCGTACGATGCCGCCGACTTCTCCACAGATCACATGTTGCCGGACATGGAGTTTGCAAAGAACCACGCGGGCCAACCTGATGTGGCCATGTTTGACTTCACCTGCATGCACAGGGCAGAGAACGCCTCTCTGGTGAAGGAGAGGAAAGGGAAGAGACTGCTCATCGGATTGGTGGGAGACTCTCTGGTAGAGGGAGAGCGTGTATCAGTTACTCTCTCAAACGACTCCGGAGAACACCAGCAAGAACTACGGTGCCTACAGCATCGATCCGTCCACACGCTACCCGAACGCCAACCTGTCCTCTATCCTACCCAGACAGGTCACACACGCACTCCCATGCGCAAACTTACACACATGCAAAAGCTGCTTGAAGTCAAGCGTCTGTATGAAGTAGAGGGTGATGAGAGTAAACCCAACAAACAGAAGAAACCCACCATAAAAACTAAACCTAAAAGAGATGAATACAATATCACTGCAAACAATAAGCTGGCCTTTGACGTCATGGAGAAAGAGTTTGGCATCGCTCCCATCATGCGTGCCAGTGAAATGACCACTTGCGGTAAAATCGACCAGCTCTCGATGGTGGTCTACCTCACACAGATACGCAATGCTCTCACCGAGAAAGACACACCAGCAGATCGTTGCAACAGCCTTTCGCCCACCAACAAGAACCTCTCTCTATCCAGAGCCCGCTCGGCCGTTTCTTTCCTCAACACGCTCAAGCGCAACTCCCTCCAAAAACGCAGGTCTGCGGCGCCTGTGGCACCCGTGTCCTCATCAGAGACGTGTGGCAGTGAGCTCTGTTATTTCTGCAAGAAGCATCTGTACGTTCTGGAGAGAGGAAGCGCCGAGGGCAAGTTCTTCCATCGCAGTTGTTTCAGCTGTTATCACTGCGGCTCCACTCTGAGGCAGGGCGGATACACTTTCCACTCCGACACGGGGAGATTCTACTGCGAGCAGCACTCAGTGGCTGAGGAAGAAGAGGGTGATGAAGGTCACAGAGGCTCACAGAATCATGTTGAGAATAGTCATAATGAAAAGGATGATAAGGAGAAGAAACAAAATGGTGAAGTTGTAGAGATGGCATCCCCACCTCCACATGTCTCCGTCAGACGGAAGGGCTCATATAAGATATCTGTTGACCCTGACTTTGAAGAGTCGAATGAGTGCCCTACTCCCACGGAGCAAGATGACCAACTGCCTGACCTTAAGGAGTCTCATGAACCACACAAACCCTCAGAGCTCAATCCAGAGAGCACAGGCATCGAGAGCCAACAAAATAACAGCAGTCCATCCGTTCCAGTGCCGGCCCCGCGAGGTTCCAAAGCTCCGCTGTACCCTCCGCTCCCAAAACCTCGCACTGTCCATAACGTGATAACCGAACCCTCAAATATCCCAGAGGAACCAGAGGAAACTCATCACGAGCTCACGCCGGAGTCCAAACCCAAACCGTCCCTGCGCAAACTTCAGCTGAGCGAAGAGGAAAAGGCCGACCTGCTCAGCCAGGATTCGGACTCGGAGACGCCCGCCTCGTCTTCTGCTGCCTCCACCTCCTCTTCCTCCAAGCAGCATGAAGGAGGTGAGGAGGAGGGATACTGGAGTGGAGGCGTCGCTACACGGAAGAGCTTGCAAAACCAGCATCACCGTCGCTGCATGAGAAGGAAGAGTGAACCTCCGCTCACCACCCAATCGCAGCACGGAAAGATGCGCTCCAAGTTTTCCCCGTGGAATCTGTCTTCACCACGGCTACAGCAGCGCTTCAGCGTCCTCAGAGGGGGCGATTATGAGATTTCTGACTCAGAGAAACGTGACCTAAAAAGGATGAAAACTCTGGAGCGGAAAGCAAGAATGAGCGAAATCCAGCGCTTCCACAAAGCTCAGACGATCCAGAGACGGCTGGATGAGATAGAAGTGACCTTTAAAGAACTGGAGGAGAAAGGAGTGGAGCTGGAGAGAGCTTTGAGAGGAGAGGCTGGTACGGGTGACCCTGAAACAATTGACCAGTGGATCGATCTGGTCCAGGAGAAGAACAATCTGCTCTCAGAGGAGTCTGATCTCATGGTGGCGTCTCGACAGCTGGAGCTGGAAGACAAACAGAGCATGTTAGAGATGGAGCTACGGCGATACATGGAAATGGATGACACTGAGAAGACCCCTGAGCAGCGAGTAGAGGAGGAGCGGATCCTGCAGGAGATGCTGGACGTGGTGGACATGAGGGATTCACTGGTGGCCTTCCTGGAGGAGAAGAGGTTGAAGGAAGTCAATGATGAACTGTAGTACTGTAGGCAGCCCAGCTGCTCTGAGACTAAAACACAAATACACACATTTACCGGCTCAAAACGTGCCACAGGGCCCTATTGGAGTAGTTCACCATTCAGTCCATCATTTACTCATCCTCATGCTGTTCTAAACCTTCTATGACTTTCTGCCTTCTGTGGAAAACAAAAGAAAAAATTGTGCACAATCTTCTCTTTTCCATAAAATGATATTAAATGCTCACCAGGTATGGAAGCTTGTTTTCGCCACTAAATAAAAAAAAATAATAAAAAAGGTAATTGCAACTTTTTATCTCACAATTCTGACTTTTTTTTTTGCGAGATATGAAGTCAGAATTGCGAGTTATAAATTCAGAATTGCATGATATAAAATCAGAATTGTGAGATATAAACTTACAATTGCGTATTATATAATGTCCAGTTGTGAGGGGAAAAAAGACTGATGTTTTTTCTCAGAATTGCGAGTTTATGACTTTATAACTCACAATTGTAAGTTTACATCTCGCAATTCTGAGTTAAAAACTCGCAGTTACCTTTTAAATTTTTTATTTAGTGGCGGAAACAAGCTTCCATAACCAAGGGCTGTCAAGCTCCAAAAAA
>TU14402
CAGGGAGAGCGTGTATCAGTTACTCTCTCAAACGACTCCGGAGAACACCAGCAAGAACTACGGTGCCTACAGCATCGATCCGTCCACACGCTACCCGAACGCCAACCTGTCCTCTATCCTACCCAGACAGGTCAAGCGTCTGTATGAAGTAGAGGGTGATGAGAGTAAACCCAACAAACAGAAGAAACCCACCATAAAAACTAAACCTAAAAGA

Function

symbol description
mical1 Predicted to enable FAD binding activity; actin binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen. Predicted to be involved in actin filament depolymerization and sulfur oxidation. Predicted to be located in cytoplasm. Orthologous to human MICAL1 (microtubule associated monooxygenase, calponin and LIM domain containing 1).

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K19947 MICAL; F-actin monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00538192_00559082.mRNA False 3906 mRNA 0.49 19 537593 559082
TU14402 True 214 lncRNA 0.49 2 553403 553752

Neighbor

gene id symbol gene type direction distance location
CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding downstream 20207 505754 ~ 517386 (-)
CI01000001_00500347_00500698 G0S2 coding downstream 36895 500083 ~ 500698 (-)
CI01000001_00493196_00498517 OTUD3 coding downstream 39076 492765 ~ 498517 (-)
CI01000001_00445369_00466166 TMCO4 coding downstream 70696 445240 ~ 466897 (-)
CI01000001_00362143_00378213 NA coding downstream 159380 361614 ~ 378213 (-)
CI01000001_00580789_00602408 SRC coding upstream 19994 579076 ~ 602628 (-)
CI01000001_00636063_00642086 KCNG1 coding upstream 76960 636042 ~ 642379 (-)
CI01000001_00716122_00741331 NA coding upstream 157021 716103 ~ 741620 (-)
CI01000001_00754687_00806154 ATP9A coding upstream 195483 754565 ~ 806542 (-)
CI01000001_00808831_00814314 SALL4 coding upstream 248856 807938 ~ 814641 (-)
G12955 NA non-coding downstream 32545 504849 ~ 505048 (-)
G12946 NA non-coding downstream 123645 413684 ~ 413948 (-)
G12945 NA non-coding downstream 131434 405331 ~ 406159 (-)
G12896 NA non-coding downstream 177854 358871 ~ 359739 (-)
G12933 NA non-coding downstream 201560 335725 ~ 336033 (-)
G12963 NA non-coding upstream 46019 605101 ~ 606584 (-)
G12907 NA non-coding upstream 55138 614220 ~ 711316 (-)
G12997 NA non-coding upstream 258705 817787 ~ 818127 (-)
G12999 NA non-coding upstream 261307 820389 ~ 820588 (-)
G13009 NA non-coding upstream 270286 829368 ~ 829618 (-)
CI01000001_00238241_00249437 NA other downstream 280076 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 402668 122814 ~ 131380 (-)
G14104 NA other upstream 1204587 1763669 ~ 1771468 (-)
G14219 NA other upstream 1435128 1994210 ~ 1994898 (-)
G14228 NA other upstream 1496892 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1700307 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 3833232 4392314 ~ 4399804 (-)

Expression


Co-expression Network