CI01000001_00716122_00741331


Basic Information

Item Value
gene id CI01000001_00716122_00741331
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 716103 ~ 741620 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00716122_00741331.mRNA
ACTCTATTATTACACACGAGCGACGCGACGCATTAAACGCGTCTTGTTAATTCTATTGCGTCCATTCGCAACGCGTCCTGTTCACTGAAAGCTGATTTTGTCGCCGGTTGTGTAAATGGGGGTGTGTGTGAGTTAAGTTTAAGGCGGAAGTTGAACTTGCCCTCTTACACGTTTGTCGTTCGATGTCATTCATGCGTTTGGGTGCTCGGATCCCCGCGTGCAAAACAGCCGGTGTTCTCTCGACACGTTTATGAAGTTGCTGTGGTGTAAATAAATCAGATTGAGACAGATGAGCTCTTTTTACGGAGATAAGGCTGCGTTAGGGCTGGCTGAGGAGCTCAGTCAGGTGAACTGTCAGGATGAGCTGGAGTTTGACTATCTTTTTGAGTATGGAACCTCCACGGGACTTCAAGATGAGCAAAACATCTCCTCTGACAAAGACCTCATCTCTGCTCCCAGCCTCTCCTATCCTCTGGTGGAAGCTTCACCCTACGGCATCAAGCCGTGCGCGTCTTCGTACGCGGAGGTCACCAACGAAGGCTACGAGCAACTGGATGCAAAGAGCTACCTGGAGTACGGCAGACCCAACAGCCAGGCCCTGAGTCCCCGAATTGAGATCACGCCCTCCCGTGAGCACTATAGTCATGGTCGAGACTCCCTCCAGAACCATCTTGTGAACACCAGCCCCAGTGCCGGGCTCACCGTACCCGGTCACGATCCTCTGGCCTACAGGGAGTCGCAGTGCCTGAGTCCCGCCAGCAGCAACTCGTCCACCTCCTGGCACTCAGAGAACCACTCGCCCTTTACCTCGCCCTGCGTTTCGCCCAGCAACAGCCAGGCCACTGGAGAACTCTGCCCACGACTTCAGGGCATTTACACGGGTTCCCCTCGAACCAGTCCGGGCACTTCTCCACGAACCAGCCTGGCCGAGGACGGCTGCGTAGGGCCGCGCTCTCCTTCCCCCCGGCCTGGCTCGCGTTCCACCTCCCCTCTATGCAAACGCACCTACGAGATGTACAGGAACCCCAACCTGGTGCCGGTGGCCCGATCACGCAGCCCGTCACCCCACGGTGGCCACGAAGAGCATCACTCTTATGGCTCAAATAACCTCTCAGGGTCCATGAATGGGTTTGGAGTTGGCCAGGCTAGTTCCATTCCTACCAAGATCGTGAAGACTAACCAGCAGGTCTACCCGCTCTACCAAGACAACCACACTGAGAGTTACCTGGTGTCATGTGACCAGGATGTGAAGACCAAACCTGGCTCTGAACCTTTCTTCGTAATCCCTCAAATGTGGCCTAAACAGCTGGTGCCTGGCATATGCAGCATCCCCGTGGCTTCCCTGCCCCCGCTGGAGTGGCCCCTACCGAGCCGCACCGATCAGTACGAGCTCCACATCGAGGTGCAGCCCAAACCCCACCACAGAGCCCACTATGAGACCGAAGGCAGCCGAGGGGCGGTCAAAGCCCCGACTGGAGGTCACCCTGTGGTCCAGCGGAGCGGCCAGCATCCTTCCGATGTCAATGCTCTGGTAAAGATTGCAGACTGCCTTGGCAGAGCCAAAATGTTTAATGCTTTCCATTCCCTGGCGCTCGATGTGTTACGTGGATACAGGGGCAAGGAGCCGCTTGGTTTGCAGATCTTTATTGGCACGGCAGACGAGCGAATCCTGAAGCCTCACGCTTTCTATCAGGTCCATCGCATTACCGGCAAAACCGTCACCACCACCAGCTACGAGAAGATAATCAACAGCACCAAAGTCTTGGAAATTCCTCTTGAGCCAAAGAATAATATGAAAGCAATAATTGATTGTGCCGGGATTCTCAAGCTTCGGAATGCAGACATTGAGCTGCGGAAAGGGGAGACGGACATTGGGCGTAAAAACACGCGAGTTCGACTGGTATTCCGTGTTCATATTCCCCAGCAAGGAGGCCAACATGTGTCTTTACAAGTTGCTTCGCATCCCATTGAATGCTGTAGCGTACGCTTCAGATTACAGCGTGCCACACATCTATCCAAAGCCCAGAGGTCTGCCCACGAGCTGCCCATGGTAGAAAAGCAGGACATGGATGCTTGTTCGGTTCTTGGAGGCCAGCAGATGATTCTCACCGGCCAGAACTTCAGCGCAGATTCGAAGGTGATCTTCATGGAGAAGACTCATGATGGACAGCAAATTTGGGAATTGGAAGCCACAGTTGACAAAGACAAAAGTCAGACAGTAAGTCCAGTGCCTGCATTACATAACTTACTGTACTTCCTGAAGGTCTATATTCAGTCCTCTTCTTGTAATCGGTCTATAGATACAGCAATAAAACTATTCTCTCATTCACAGAGCATGCTGTTCATTGAGGTGCCTCCATATAGAGACCCATCCATTTGCCATCCTGCCAAAGTCAACTTCTACGTAATAAATGGGAAACGGAAGCGCAGTCAGCCTCAGCATTTCACCTACACGCCTCTACCAGTTCCGTCTATTAAGACAGAGCCGGTGGATGAATATGAATCTGGTCGGATGGGTTATTCCATGTCACAAATGCTGGGGGTGTCTCCCCAGCCGTACTATAACCCTCGGGGGGTCATCAGCCCAGATAGTGGCCTAGTGCCTGGCCTCGTCCCCTGTCAGCAGGCCCGCCTAGGTGTCTCCCCTCCGGACCACCGATTTCAGCAGCAGAGCCAAGCCATAATGTACTCCCGTCCTGGAAAAAGCTTGTCAAGCAGTCCTATTTACTCTCAGACGGGAGCTGCTATGATGCCAGACTCCCATCGTTCAGTTCTGGTCCACACGGGTTCCCCAGCCCAGTCCTCTCACCTGGGTGGCCAACATCCCTCTAACCAGCATTCCTCAATCATCCAGTTCTCTCCCACCAACCACCACATGCTCAGAGGAGGAGATCCCCCTGCGCCACCACCCCCAGAACATCAGCACATCATTTATTGCGAGGGCTATAACCAGCATGGTCCCCAAGCTACAGGGGCCAACCGTTCACCAGCACCAGCCCAGGCACCGCAGCACCCTCAGAATTACCCTACAGTCATCCAGCAGCAGCCCTTCCTCCAGAGAGTGGCCAAAGACAGGTCACCTCCTGTCCAAGTAGAGCCACAGAGATGTTCCTCCGCAGAAGAACAGAGAACCAGTGTTCCTGGACGAGTCACAGTCAAGCAGGAGAACTTGGATCAGGCCTACCTTGATGATGGTCACACTCTTGCCAATATGGAGCACAGAACTCTTATTTGCAGCTGCTGCACTTATCCAGAAAGGCAGCCTGATCTGAACAAGATAGTGATGGGTGGGAGTCCGCAGGAAAGGGAAAGGGCCATGTTGGATGGAAAAACTGAAGCGGATGGGACCGGGAGCCAAAGATGGAATTTCTTCTACATAGTCTAATAGGGTTTCCCTGAGTAAA

Function

NR:

description
hypothetical protein Z043_102654

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00716122_00741331.mRNA True 3404 mRNA 0.53 11 716103 741620

Neighbor

gene id symbol gene type direction distance location
CI01000001_00636063_00642086 KCNG1 coding downstream 73724 636042 ~ 642379 (-)
CI01000001_00580789_00602408 SRC coding downstream 113475 579076 ~ 602628 (-)
CI01000001_00538192_00559082 MICAL1 coding downstream 157021 537593 ~ 559082 (-)
CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding downstream 198717 505754 ~ 517386 (-)
CI01000001_00500347_00500698 G0S2 coding downstream 215405 500083 ~ 500698 (-)
CI01000001_00754687_00806154 ATP9A coding upstream 12945 754565 ~ 806542 (-)
CI01000001_00808831_00814314 SALL4 coding upstream 66318 807938 ~ 814641 (-)
CI01000001_00839822_00841040 NA coding upstream 98010 839630 ~ 842421 (-)
CI01000001_00872245_00878013 ZFP64 coding upstream 129260 870806 ~ 878013 (-)
CI01000001_00925612_00928679 NA coding upstream 183820 925440 ~ 928949 (-)
G12907 NA non-coding downstream 4787 614220 ~ 711316 (-)
G12963 NA non-coding downstream 109519 605101 ~ 606584 (-)
G12955 NA non-coding downstream 211055 504849 ~ 505048 (-)
G12946 NA non-coding downstream 302155 413684 ~ 413948 (-)
G12997 NA non-coding upstream 76167 817787 ~ 818127 (-)
G12999 NA non-coding upstream 78769 820389 ~ 820588 (-)
G13009 NA non-coding upstream 87748 829368 ~ 829618 (-)
G13236 NA non-coding upstream 118619 860239 ~ 860528 (-)
CI01000001_00362143_00378213 NA other downstream 318970 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 458586 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 581178 122814 ~ 131380 (-)
G14104 NA other upstream 1022049 1763669 ~ 1771468 (-)
G14219 NA other upstream 1252590 1994210 ~ 1994898 (-)
G14228 NA other upstream 1314354 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1517769 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 3650694 4392314 ~ 4399804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021917 nfatc2a coding NC_007134.7 CM002907.2 39089574 ~ 39164866 (+)
bowfin (Amia calva) G30104 NA non-coding CM030123.1 CM030123.1 50798120 ~ 50798319 (+)