CI01000001_01555180_01558113 (AGMAT)


Basic Information

Item Value
gene id CI01000001_01555180_01558113
gene name AGMAT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1554301 ~ 1558113 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01555180_01558113.mRNA
GAGTTCGTTTCATGCGACGCTAAACATGTTTTCTTCCATTAAAATTGCTAATAAAACTCGAGTAGTCTTCGGTGGATCTCAAGTTTTTAAAACGTGTGCTTCTCAGAGAGTCGTGCAATGGGGAACCGTTGACGGGAATCAGACCAGTGTGTCTTGTACACGGCGAATGTCCGGGAAAGGTTTCAATGTCCCACCGAGCGCGGAGTTTGTGGCGAGAGTAAGCGGAATCGCGACTATGTTCAAACTGCCGTTTCAGAAAACAGCGGACGGACTGGACGCGGCGTTTGTCGGTGTTCCTATCGACACCGGAACATCCAACCGACCCGGTGCAAGGTTTGGTCCGAGGCACATCAGGGCAGAATCTGCTATGATAAGGGCATACAGTGGCTGGACAAGAGCGGCCCCGTACGAATCAATAAGAGTGGCAGATATCGGTGACATCAACGTCAACCTTTTTGACCTGAAGGACACATGCAAAAAAATACGTGAGGCTTACCGTGAAATTGTGGCCACGGGCTGCATCCCACTAACACTGGGAGGTGATCATACAATTGCATACCCGATTCTTCAAGCAGTTGCTGAGAGACATGGTCCAGTGGGCCTAATACACGTGGATGCCCATGCAGACACTAGTGACATGATTCTGGGTGAGAAGATTGGCCACGGGACCCCTTTCAGGCGCTGTGTGGATGAGGGGCTCCTGGACTGCAAGAGGGTCGTCCAGATCGGGCTTAGAGGGTCGGGTTATACTCCAGATAATTATGAGTGGAGCCGAGCACAGGAGGTTCGCTCACAGATGGGAAATGGACCTGTCTATCTCAGCTTTGACATAGACAGTCTGGACCCTGCATTCGCTCCTGGGACAGGAACGCCCGAGATCGCGGGTCTCACACCCATTCAGGTATGTTTCGCCTGTCCAGGTCGACCAGAGATGCTCAATCCTGGTCCTGGAGATCTGCAACTCCCTTGAACCAGCTAAAGAAGGTCTTTGGGTTCACTTGTTGATAATCATACTTCTACAAGTATACATACAAATATGACTAAAGAATGTACACAAAAGGTATATACTCTGCTAGTGATAAATAAGTATGTAGGATGGATCTGCACACTCTTATATTTTATTATCCCAAAAAATATGCAAGAATACATTTTTGAGTATCAATTGGTCCAGTAAATCCAATAGTGCATCCCGGCATCTTTGAGGGACAATTTTTCAACATACTGTACTATAATTTGGGACATGCTAACTCTAATCTGACAGTACTGGTAATGTGCAATTGGGATGTAGCTAGGATCTCACGCTCAGTTTTGAGCAGCTCATAGACTTTGCACATCAAAGTTTAATATTAACCGTAGGTTACTGTAGGTTTATGTATCTTGAAATTTGCTTTTAGGGTCTGGAAATCATCCGAGGTTGTCGAGGTCTTAATCTTGTCGGTTGTGATTTAGTTGAGGTTTCTCCACCTTATGACACCACAGGTACTGTATTACAATGAGTAAATAAGACATTTAAGATGAAAGGCTTCATTAATGCATAATGTTTCATTTCTCATACTGTTTGATCTAATTCTGGAAATGTTTTTCATAGGAAACACTGCTTTGACTGGTGCCAACCTCCTTTTTGAGATGATGTGTGTCCTTCCGAAAGTCAAATACTATTGATTGCTTTATTTTTCTAAGATGAAATGTCCCAGGTAATTGCACAGTGACATGATTTATGTACAAAATCAGTATTAATATTATTTTCACTAACAGAAACCTTTATTTGGAGTAGCAAAACAGTGTCATACCGTCACAATTTATGATAACAACCCTTCATATTTATGAATTGTGGGGGAAATTAAATAAA

Function

symbol description
agmat Predicted to enable agmatinase activity. Predicted to be involved in putrescine biosynthetic process from arginine, using agmatinase. Orthologous to human AGMAT (agmatinase).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K01480 speB; agmatinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01555180_01558113.mRNA True 1849 mRNA 0.44 5 1554301 1558113

Neighbor

gene id symbol gene type direction distance location
CI01000001_01476453_01500640 NA coding downstream 53333 1475534 ~ 1500968 (-)
CI01000001_01421483_01453330 NA coding downstream 100971 1420930 ~ 1453330 (-)
CI01000001_01377825_01378304 NA coding downstream 175997 1376792 ~ 1378304 (-)
CI01000001_01368611_01369774 IRX7 coding downstream 184502 1368405 ~ 1369799 (-)
CI01000001_01313263_01351961 NA coding downstream 202066 1312687 ~ 1352235 (-)
CI01000001_01565290_01569360 PINK1 coding upstream 7177 1565290 ~ 1569360 (-)
CI01000001_01582644_01584095 NA coding upstream 24531 1582644 ~ 1584440 (-)
CI01000001_01637015_01638058 FAM43B coding upstream 78582 1636695 ~ 1638058 (-)
CI01000001_01707363_01743870 VWA5B1 coding upstream 148976 1707089 ~ 1743870 (-)
CI01000001_01757774_01758445 NA coding upstream 199076 1757189 ~ 1759443 (-)
G13619 NA non-coding downstream 142650 1411444 ~ 1411651 (-)
G13618 NA non-coding downstream 143145 1410887 ~ 1411156 (-)
G13415 NA non-coding downstream 295408 1258524 ~ 1258893 (-)
G13410 NA non-coding downstream 301008 1252995 ~ 1253293 (-)
G13409 NA non-coding downstream 301953 1252125 ~ 1252348 (-)
G13670 NA non-coding upstream 89949 1648062 ~ 1648288 (-)
G13671 NA non-coding upstream 91079 1649192 ~ 1649430 (-)
G13656 NA non-coding upstream 102142 1660255 ~ 1660709 (-)
G13674 NA non-coding upstream 108311 1666424 ~ 1667059 (-)
G13678 NA non-coding upstream 117693 1675806 ~ 1676078 (-)
CI01000001_00362143_00378213 NA other downstream 1157168 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1296784 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1419376 122814 ~ 131380 (-)
G14104 NA other upstream 205556 1763669 ~ 1771468 (-)
G14219 NA other upstream 436097 1994210 ~ 1994898 (-)
G14228 NA other upstream 497861 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 701276 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2834201 4392314 ~ 4399804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021898 agmat coding NC_007134.7 CM002907.2 37482727 ~ 37490249 (+)
tiger barb (Puntius tetrazona) G176666 LOC107599515,LOC108237584,LOC107576289 unknown NW_025047825.1 JAEQBD010000170.1 51716 ~ 55729 (-)