CI01000001_01565290_01569360 (PINK1)


Basic Information

Item Value
gene id CI01000001_01565290_01569360
gene name PINK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1565290 ~ 1569360 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01565290_01569360.mRNA
ATGTCAGTGAAACATGCTCTCAGTCGGGGGTTGGAGCTGGGGAGGTCAGTTTTCCAGCTGGGTCTCTTCAAACCAGCCGGCCGTGTGGCAGCGAAGTTCCGCGGTGAGCGGCTGCGTGTGTCCCGTCCGACCCGCACCGTCCAGCCGCAGACCTTCTTGCCTGGCCGGTACCGCTTCTTCCGCCTGTCTCTCAGCGGGCTGGCCGCCCAGCTCCAGTCCGGCGCTTTCAGGAGAGTGATTGGGGGTGGTTCACCCAGAAACAGGGCTGTTTTCCTGGCGTTTGGGGTGGGTTTAGGGCTGATTGAACAGCAGCAGGAGGAGGACAGGACAAGCGTTGCTCTGTGTCAGGAGATACAGTCCGTATTCAGAAAGAAAAAGTTCCAGAGCCCTCTGAAGCCCTTTACATCAGGCTACAAGTTGGAGGACTATGTCATTGGGAAACAGATCGGGAAAGGTTGTAATGCAGCCGTGTATGAGGCAGCGGCTCCGTTCGCGTTCCCTGCGGAGACTGAGAAGTGTTCACTGGTGGAACTGAACCAGAAAGAAACAGATGATGACAATAAGAAAGCAGGACCGCTTAGATTCCCTACTACACCCAGCTTTCCTTTAGCTATGAAAATGATGTGGAACATTGGGGCTGGTTCATCAAGTGATGCCATCCTTCGCTCTATGTCTATGGAGTTGGTTCCTGCCTGTCCACAGGCCTTAACGAAAGAGCAAGGAGAGATTGCTTTGAATGGGCACTTTGGAACAGTGCCTAAACGGCTGACCGCTCATCCCAACGTGATCACAGTGTACCGGGCCTTCACCGCGGAGGTCCCGCTGCTGCCTGGAGCTCAGGAGGAGTACCCCGATGTCCTGCCTGCCCGACTCAATCCATTGGGTTTGGGCAGTAATCGAACACTGTTCTTGGTCATGAAGAATTACCCATGCACCCTGCGGCAGTACCTGGAGGTGTGCGTGCCAAACCGGATGCAGGCCTCTCTCATGTTGCTGCAGCTGCTGGAAGGGGTGGACCACCTGTGCAGACAGGGCATCGCTCACAGAGACCTCAAATCAGACAATGTGCTCCTGGAATTTGACAGCAAGGATTTGGGCCTCAGACTGCCCTTCAACAGCTGGTGGGTCAACAGAGGGGGAAACTCCTGTCTGATGGCACCTGAGGTAGCCACAGCAGTCCCAGGTCCAGGGGTGACGATTGATTACAGTAAAGCAGATGCCTGGGCCATAGGGGCGATTGCCTATGAGCTCTTCGCTCAGCCAAACCCCTTCTACAGCTCACAGGGGCTGGAGAGCCGCAGTTACCAGGAAAGACAACTCCCTCCACTTCCTGCTGCTGTACCTGCTGAAGTACAGCTAGTAGTGAAGCTCCTGCTACGCAGAAACGCTCGCAAGCGCCCCAGTGCACGAGTGGCCGCTAACATACTTCACATCAGCATGTGGGGCAAGCGTGTCTTGGCCAGCTTGGATCAGGCAAGAATGGATAAAATGGTCGACTGGCTGCTGTGTCAGTCTGCTGTGGTGCTCCTGCAGGGTCGTGGGCCCGGCGGAAGCTCAGTGGAAGCTGAACTCCAGAGATCCTTCCTTGCCAACATAGACCTGGAGGACCTCCGAACCGCAGTCAGCTTCCTCGTGTATGGACAAGAGCAATGGCAGTCTCTGCTCATGCACTAG

Function

symbol description
pink1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including dopaminergic neuron differentiation; nucleate erythrocyte development; and regulation of vascular endothelial growth factor signaling pathway. Located in cytosol and mitochondrion. Is expressed in several structures, including digestive system; gill; heart; nervous system; and spleen. Used to study Parkinson's disease and early-onset Parkinson's disease. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 6. Orthologous to human PINK1 (PTEN induced kinase 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K05688 PINK1; PTEN induced putative kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01565290_01569360.mRNA True 1674 mRNA 0.56 8 1565290 1569360

Neighbor

gene id symbol gene type direction distance location
CI01000001_01555180_01558113 AGMAT coding downstream 7177 1554301 ~ 1558113 (-)
CI01000001_01476453_01500640 NA coding downstream 64322 1475534 ~ 1500968 (-)
CI01000001_01421483_01453330 NA coding downstream 111960 1420930 ~ 1453330 (-)
CI01000001_01377825_01378304 NA coding downstream 186986 1376792 ~ 1378304 (-)
CI01000001_01368611_01369774 IRX7 coding downstream 195491 1368405 ~ 1369799 (-)
CI01000001_01582644_01584095 NA coding upstream 13284 1582644 ~ 1584440 (-)
CI01000001_01637015_01638058 FAM43B coding upstream 67335 1636695 ~ 1638058 (-)
CI01000001_01707363_01743870 VWA5B1 coding upstream 137729 1707089 ~ 1743870 (-)
CI01000001_01757774_01758445 NA coding upstream 187829 1757189 ~ 1759443 (-)
CI01000001_01760676_01761671 CPTP coding upstream 190806 1760166 ~ 1761671 (-)
G13619 NA non-coding downstream 153639 1411444 ~ 1411651 (-)
G13618 NA non-coding downstream 154134 1410887 ~ 1411156 (-)
G13415 NA non-coding downstream 306397 1258524 ~ 1258893 (-)
G13410 NA non-coding downstream 311997 1252995 ~ 1253293 (-)
G13409 NA non-coding downstream 312942 1252125 ~ 1252348 (-)
G13670 NA non-coding upstream 78702 1648062 ~ 1648288 (-)
G13671 NA non-coding upstream 79832 1649192 ~ 1649430 (-)
G13656 NA non-coding upstream 90895 1660255 ~ 1660709 (-)
G13674 NA non-coding upstream 97064 1666424 ~ 1667059 (-)
G13678 NA non-coding upstream 106446 1675806 ~ 1676078 (-)
CI01000001_00362143_00378213 NA other downstream 1168157 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1307773 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1430365 122814 ~ 131380 (-)
G14104 NA other upstream 194309 1763669 ~ 1771468 (-)
G14219 NA other upstream 424850 1994210 ~ 1994898 (-)
G14228 NA other upstream 486614 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 690029 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2822954 4392314 ~ 4399804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021897 pink1 coding NC_007134.7 CM002907.2 37466967 ~ 37480785 (+)