CI01000001_01707363_01743870 (VWA5B1)


Basic Information

Item Value
gene id CI01000001_01707363_01743870
gene name VWA5B1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1707089 ~ 1743870 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01707363_01743870.mRNA
TGCCAATGGCTTTTTGATGTGCCAGAGGCTTCTGTTCCCTTTGATGGTGCTGAGCCAGACCTGAACTTTGTGTGCCACAAATCCACCGTGGGACGGGGGCGAAACATCACCTATCGCCCCCTTCTCTGCATGCGTGAAGCTGTACTGGACAGAACCACCATCATGCCAGGCCTGATCAACAAGAGCAAACGGAGCGCTCTGCCTCTCAGTGTCTCAGACATCACTTCCTGTGTCAGGGGTTACACCCTGGCAATGACGGCCTCCTTGACCTATGAAAACATTGAAGATCACCCCGTCGAGGGAATCTTTATATACCCTCTGGATGAGTGCAGCGTGGTGGTTGGATTCGAAGCGATGATTGGCAGTCAGATAATAACCGTGCAGGTCAAAGACAAAACGAAAATCGATGACTGTTACTTTGATTGCTGCAATGCCAGTGGAGCCCCGCAGAGTGGAGGTGGACATATCGTTATGGATGAGGATCAGGAGAGGACAGTGCTGGTGGTCAGTCTGGGGGTCATTCCCCCTTTGGAGACCATTAATATACTGGTCAGCACGTCCTCAGAGCTCAGCACACTCCCTAACGGTGGAATTCGGGTAACCTCACCACCCGTCTGCTCTCCAAGAGTCCAACGCTCTGTCAAAGAGGAGCAGGCGTTTTCGCCCAGCACTTCTAGGAGGAGGGATCAGCATCATTGTGCACAGGGAGCACACGAGCAGGCGGCCTCAGGTGTGTGTTTGGCTGCTCTGTTGGAGGAAGAGGCCATCAACTCCATTGACTATGAGTTCAACTTCCATCTTGAGATCAGAGGACCATATTTACTTGCAGGTGTGGAGAGCCCCTCACATGCCATCCGGGCGGACGCGGACCCTTCGGCTCGCTCTGCCACCAGTATTGTGGTCACACTGGCAGACAAGTACACCTACGACTGCCCTGTGGAGATACTGATCTACCCCAGTGAGCCCCATCTGCCACACGTTCTCATTGAAGACGGAGACATGACGCCGGAGGAATACGATGAGCATCTGAAAGGACGGAGCGACTACATAAAGGCCACGAAGAAGGACTGCAGTAATGAAAAGACAGTGGACATCATTCAGAAGAGGCTTCATAAAGACATCCTTCACAACCCCGTGGTCATGCTCAACTTCTGCCCAGACCTCCGCTCGACAACCTCTGACCTGCGGAGCGTCCAGGGGGAATTCATCTTCCTCATTGACCGCAGTGGAAGCATGAGCGGGGTCAACATCAATCGAGTTAAGGATGCAATGGTCGTGATTCTGAAAAGTCTTTTCCCAGCATGCTTATTCAACATAGTGGGCTTTGGATCCAAGTTCAAAACGCTGTTTGCTACCAGTCAGAGCTACGATGAGATCTGCAGTTACACTGAGATGCTCAAGATGGTCGATGTTTGTGTTTTTCTGCTGGGATCCAGTGGCAAAGGTCTGGGTTTATATAATGAATTTCTATTCAAGTTTCTTACTGATTTCATAATGCATAAAAACACTGCTTATTCAGTAGTCTCTGTGGAGAGCTTGGCGTTGGCTTACGAACACGTGAAGAAGATCCGGGCTGACATGGGCGGCACAAACATACTGGCTCCTCTCAACTGGATCCTACGGCAGCCCATGCAGAAAGGCCATCCTCGCCTGCTCTTCCTCCTGACCGACGGAGCCGTCAGTAACACGGGGAAGGTTATTGAGTTGCTCCGCAGCCATGCCAGGTTCACCAGGTGTTACACATTTGGTATAGGCCAGGGTGTGTGCAGGAGGCTGATTTTAGGACTGTCCGCCGTTTCCAGAGGCACAGCAGAGTTCTTGGCAGAAGGGGAACGACTGCAGCCCAAGATGATTAAGTCGCTGAAGAAGTCCATGACATCAGTACTGACTGACATCTCCATTGAGTGGCTGTATCCAGAGACAAAGGAGATCCTGCTCTCTCCATTGGGGGCGACCTGTCTGTTCCCGGGTGACCGGCTGATTGGATACAGTGTGGTCTGTGATACCTCCCGATATCACTCCAACCCCAAATCAGACAAACGGAGACGATACAGCATGATGCGTTCCAACGAGTCCGCCAGTTCCGTGTTCTATCACTCTCAAGAGGAGGATGCTGGGAAGTTTTACTGTGACGGTCAGGGGCCACACAGGGACAATCAAGTCGGCTCGCTGTTTGACAGTTGCCAGGAGACCACGTCTGAGAGCAGTCCTATTGCCACAGAGCAAGACATTATGGGAACTGACACAAGCACCTCTCCGAGAAGACGTGCTTATAGCACCAATCAGATCGTAGATTACAACCCAGTGAAGAAGGCCTACACCCCCAGTGACCCCAGCTCAGTGGTGGGGAAAAACCCTCTTAGACGAGCAAAAGTCCAGGAGCTCATCGGTCAGACTCATCCTGACTATGGAGCTCAGTGGAAAATGGACTACCAGCCACAGTTGGCCAGCCTGTGTGCCACGTCTTCAAGAGGACGTCCCATACCTGCTCACAAACCTCCAGTGCAGCAACAAGAGGGTCTCCAGGGGGAGTCGAAGGCAGATCAGATCCACCATGGCCCCTCTGCACAGGGCCCTGTGGTGGAAGACGGCTCCAGGTCTTCAACAGACAGCCCTTCTCTAGGCAGCACTGGCGATGCGGATGGATACACACATCAGCTTTGCGAAGTCGAAACACCCCAAGATCCTCACGCACCAGAATTCAAGGCCAGTCACGGAAAGGGAGATTGCAAAGCAGTCGTGTCAGGACTGCTGTGTGGGAAACCCATGAAATGGGAGGTGATCTTTGACATTCAACCTTTTCTAAAAGGTCGAGAGCGGGAGGAAAAAGTTCACGAGGACCTGTGGAACGAAACCTTTCATCACTTGGCAGGACGCTCCATTATTAAAGACTTTGAACATATGGCGGACAAAGAGTGTGAGATTGAGCATGGTTCTGGAAGAAGGTACCAGCTTTACGCCATCCACACGAGCAAAGCCTGCAACATCTTGAGCAAATACACAGCGTTTGTACCTATCGATCTGGACAGCAATGAATACTTACCCACCTACGTTGAGTACAGCCACCCTGGGGAGGATCATAAACGAAGTTCGCACTGCAGTTCTCGTTCCGGCAACAGGAAGACCCGTGGCTACTCTGTAGGTCTGGGTCGGTCACAGTCAGGAGGTTTGTCTGGGCAAGATGATGCAGCATTATCCTACAATGTAGACGATGGATCCCAGTCCCCCAGCAAAACTCCCTCCTCCTCCAGTTGGGAACGATGTAGCTCTTCTGAAGCCTCTCAAAGGAGTCCGTCGGTGACCTCCGACCACTCGCAGAGATCAGTCGAGAGCCTTTTCTCTGCCAGCAAGCTGAGCCTGAGCAGGACGCGTCTGCTGACGAAAGCGGCCAGGGGATTCATGAGCCGGTCACAGAGCAAAATCAGCAACTCAGTGGGCGAGAGCGAAAATGACAACAAGGACTACATCCCTCTGGTGTCATTGCAGCTGTCCTGTGGGGCGTTCATGTTGGACAGTGCCTTGTGTGACGCCATCAGCGTGCCCATGGACAAGCTGAAGTGGACGTCACCCTTCACCAGCCACAGAATCAGCCTTACCCACGTGTCCCACTCCAGCTCCCGGCGCTCCGAGAGCCTGGAGGTCCACCGTGGCTCCTCACCTCCTCCAAAAGACTCAGACTTGAACTCTGAATGTGAGGAGCTGATTTCCCGCACGTCCTCATCCTCTTTCCAGGCCCGAAGCCCTCGGATGGAGGGCGAGCCCTCGCTGCTGGGCAGCTTCTCGTCGATGTCGACCGAAGCCCCGCCCTCGCCCATCAACTCATTGTATGACAGCGGACGGGGGTCTGAGTCTGAAATTGCAGAGATGCCCCTGTCTGGTTCGCCTGGGAGCCTGCAAAGGGCCGTGCAAGACCCGGAGGGGATGGTGTGGGCCACTGCAGTAGCTCTGGCCTGGCTGGAACACAGCTCAGCCAGTTATTTCATAGAGTGGGAGCTGATCGCAGCCAAAGCAAGCATGTGGCTAAATGAACAGATCATCCCAGAGGGCCGAGACCTGGCGTCGGTCAAAGCCGCAGCCAATCAACTCTTCATAATCCTCAGACACTGGGACGAAAACCTGCAGCTCAACATGCTCTGCTACAACCCCAACAGCATGTGAGTCCTTATAGGGTAGGGACTAAACTTCAAACTATGCTAAACGAAAGTTTTACTCTCCTTGATTTGTTTTAATGTTTATTGTGTGGGTTTTGTTTTAGTTTTATGAATAGAAATCGTATTTCATTACCATCCACCCAAAGGCCAGAAACATACTTTTGCGCAGGTACGTAGATGCTAATATATTGCAAGCTTCCTATTGTGCATATGTAACTTGCGTTCTTGCGTTAATGTGGCAGTAACAAACCTGTAAAAGACTGTATCCACCTCAGAGTAAA

Function

symbol description
vwa5b1 Orthologous to human VWA5B1 (von Willebrand factor A domain containing 5B1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01707363_01743870.mRNA True 4432 mRNA 0.52 23 1707089 1743870

Neighbor

gene id symbol gene type direction distance location
CI01000001_01637015_01638058 FAM43B coding downstream 69031 1636695 ~ 1638058 (-)
CI01000001_01582644_01584095 NA coding downstream 122649 1582644 ~ 1584440 (-)
CI01000001_01565290_01569360 PINK1 coding downstream 137729 1565290 ~ 1569360 (-)
CI01000001_01555180_01558113 AGMAT coding downstream 148976 1554301 ~ 1558113 (-)
CI01000001_01476453_01500640 NA coding downstream 206121 1475534 ~ 1500968 (-)
CI01000001_01757774_01758445 NA coding upstream 13319 1757189 ~ 1759443 (-)
CI01000001_01760676_01761671 CPTP coding upstream 16296 1760166 ~ 1761671 (-)
CI01000001_01772744_01773670 NA coding upstream 28461 1772331 ~ 1773670 (-)
CI01000001_01873684_01874535 NA coding upstream 129770 1873640 ~ 1874535 (-)
CI01000001_01902970_01917410 MARCH9 coding upstream 158559 1902429 ~ 1917454 (-)
G13679 NA non-coding downstream 30196 1676539 ~ 1676893 (-)
G13678 NA non-coding downstream 31011 1675806 ~ 1676078 (-)
G13674 NA non-coding downstream 40030 1666424 ~ 1667059 (-)
G13656 NA non-coding downstream 46380 1660255 ~ 1660709 (-)
G13671 NA non-coding downstream 57659 1649192 ~ 1649430 (-)
G14096 NA non-coding upstream 5236 1749106 ~ 1753231 (-)
G14100 NA non-coding upstream 10577 1754447 ~ 1754991 (-)
G14104 NA non-coding upstream 24086 1763669 ~ 1771468 (-)
G14112 NA non-coding upstream 123765 1867635 ~ 1871566 (-)
G14257 NA non-coding upstream 149836 1893706 ~ 1896090 (-)
CI01000001_00362143_00378213 NA other downstream 1309956 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1449572 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1572164 122814 ~ 131380 (-)
G14219 NA other upstream 250340 1994210 ~ 1994898 (-)
G14228 NA other upstream 312104 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 515519 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2648444 4392314 ~ 4399804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021890 vwa5b1 coding NC_007134.7 CM002907.2 37185247 ~ 37198890 (+)
bowfin (Amia calva) AMCG00002009 NA coding CM030136.1 CM030136.1 334436 ~ 398486 (+)