CI01000001_01833609_01860272 (CENB5, ACAP3)


Basic Information

Item Value
gene id CI01000001_01833609_01860272
gene name CENB5, ACAP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1833261 ~ 1860953 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01833609_01860272.mRNA
GTATATAGAAAAATGACCTATATTTGTGTCTGTCCAGAAGAAATAAATACTGAATATTTCACAAACATAAAACACTTTAGATTCTTTATGTATTCCTGCAATCAACAACAATGTTCTGTAAATCAAAGCTCTTAAAAAGCCCTGAAGGTCCAGCGCTCGGGGATCATTAGTCTTCATGTCCCCCTGTAGCTTATGTGGTGATGTGGATGTGACTACACCACATCCTAAGTATTTTGCATCACCTCTCTTGTTTTTCTGTTGTTCCCTATGCTCCCTCTCTTTTCTTTCTCATCTTTCATGTCGCTCCCTCCCTGCCCGAGTGACCTATTTTTACTCCGCTGCTGCAGCATGGCATACGCGATCAGTTCAGACGTCCTTGCGCAGAGACTCAGGCTGAATCTCAATGAGGCGCTGGGGTGTGATGATGATGATGAAATGTGTGTTGGGAGGTCATACTCGCAGATCCTGTTTGATCAAGCTCAGAGATCAGTGAAGCAGCAGTTGCACAGCTTTGTGAAAGATGACGTACGTAAATTCAAGGACACGAAGAAGCACTTTGATAAGGTGAGGGAGGATCTGGAGATAGCACAGGTGAAGAACGCACAGGCACCTCGAAACAAACCCCACGAGGTGGAGGAAGCCACCAGCACCCTCAACTTCACCCGCAAGTGCTTCCGACATCTCGCGCTGGACTACGTGCTTCAGATCAATGTCCTTCAAGCCAAAAAGAAATTTGAGATCTTAGATGCGATGTTATCCTTCATGCATGCGCAGTACTCCCTATATCAGCAGGGCTACAACCTCCTGGATGAGATTGACCCCTACATGAAGAAACTGGCTGCTGAGCTGGATCAACTGGTGATTGATTCAGCGATGGAGAAGAGAGAAATGGAGCATAAACATGCCACGATTCAGCAGAGGAATAAGGCTGTTAAAGATGCTAATCCTCTAAAGAAAATTCAGAGAGTTGAGATCATTGAGTGTGCTGCTGAAACAGGAAGAGGGCCATTATTGCGAGCGGACTTTGCATATGACGACCCTAAGTTGGAGTTCAACGTGGATGCGCCCAACGGATTGGTGATGGAGGGCTATCTGTTCAAGAGGGCCAGTAACGCCTTCAAAACATGGAACAGGCGATGGTTCTCCATCCAAAACGGCCAGTTGGTTTATCAGAAGAAACTAAAGGTAAGTTCAATTCAGCATTCAGTAAGTGGACACAGAAGTCACAGCAGTTTAGTCAGAGAACGTCTATTTATTCCTGTGGAAGTGCTTACTCAGGGTGCTTGCTTAAATTACTGCGACGCAGTGCTGTTTAATGCATTTCAGAGAGGAATAGGTTTATTTAGAGCTAAGTTTCAGGCTTATTGTCCTCCACAGGATTCGCTGACGGTTGTTGTGGAGGACTTGAGACTGTGTTCTGTCAAACCTTGCGAAGACATCGAGAGGAGGTTCTGTTTTGAAGTCGTGTCTCCCACCAAGAGCTGTATGTTACAAGCCGAGTCAGAGAAACTTCGGCAGGCCTGGATCCAGGCGGTCCAAGCCAGCATCGCCTCAGCGTACAGAGAGAGTCCAGACAATTTTTATATTGAGCGTTTGGACCGGACCGCCTCACCATCCATCAGCAGTATAGACTCAGCAAATGAGCCCAGAGAGCGCAGTGGGAGGGGCGAGGGCATTCTGCAGCGTATCCTGTGTCTGCCGGGAAACCAGCAGTGCTGTGACTGTGGGCAGGTCGACCCCCGCTGGGCCAGCATCAATCTGGGTGTCCTGCTCTGCATCGAGTGCTCCGGCATTCACAGGAGTTTGGGAGTACACTGTTCAAAGGTCCGCTCTCTCACCCTGGACTCATGGGAACCGGAGTTACTGAAGCTGATGTGTGAACTAGGAAACAGTATCATCAACCACATCTATGAAGGGAGCTGTGAAGAGCAGGGCGTGAAGAAACCGGGCCCCAGCAGCTCCAGGCAAGAAAAGGAGGCCTGGATCAAAGCGAAGTATGTGGAGAAGAAGTTCCTGAAGAAGATGATGACGGGTGAGGTTATGGTCAACGGCGGGAGAAAATCTGAGCGCCGATGGAACTCTAGGAAATGCAGGAGACATAACAGCGCCACCACCGTCCCCAAAGCTCACCGGAAGTACAGACAGGATCCAGGCAGTGCATCTCCTGCAACCCTTTCCTCGGCAACTGCTGCTCTGGAGAGGAAGTTCAGACGGGAATCCCTCTTTTGCCCAGATGAGTTGGACACTCTTTTCTCCTATTTTGACACTGGTTCAGGGCCTCGCAGTCTGAGCAGTGACAGTGGGTTAGGTGGCAGTACTGACGGCAGCACTGACGTCTTGGTGTTTGAGTCTGTGGTGGACAGTGTCACAGAGGAAGAGTGTGAGGTATCTGAAGACTCCAGTAATGAGGCTGAACTTGAGCCGGAGGCGTCAGATCCAGAGGATTTGAGAGAACTGGATCCCAGAGCATTACTGTATAAGGCCTGTCAGGCGCGCAATCTGCCAATCATGGCTGAAGCTCTGGCACATGGAGCTGACGTCAACTCGGTCAATGAGGAGGACGAGGGAAAAAGCCCCCTTATTCAGGCTGTGATTGGAGGTTCCTTGATAGCCTGTGAGTTTCTGCTTCAAAATGCTGCAGATGTCAACCAAAGAGATCACAGAGGGAGAGGCCCGCTGCATCACGCCACATACTTGGGTCATACTGGTCAAGTGTGTTTGTTCCTGAAACGAGGAGCGACCCAGAACGATGGTGATGAGGATGGACACGACCCACTGAGCATAGCAGTTCAAGCTGCTAACGCTGACATAGTTACTCTGTTACGTCTAGCACGTATGAACGAGGAAATGCGCGAGTCGGAGGGTCCGTTCGGTCAGCCAGGTCAATATTCTAGCAGTAGTCCCACAGAGCAGCAGTATAAGAAATGCATACAAGAGTTTATCTGTATCAACATAGCAGAGTGCTAGAGAGCCCAGCATAGTGCTTTTCCCATCATTCCCACCAAGACCTGCCATGTGTTTATCTGTAAAGATGGGTCAATCTTGCTGGAAATTCCAGCTAAACCAGCTTTTGAAGATTTTAAATGGTTTCTATAGTTGGTCATTACCAGGTCCAAGCTGGTTTAGGTGGTTGATCAGGTGAACTTCCAGCCCAATGGGACCAAGCTTAACCTCTTGCTCAAAGTGGTTAGGGCTGGTTGACCACTTCACATGCTGCAGATTTCAGATCACATTTCAAAGTTAGTCAGATGATTGACTGGCCACCATAGTTTGGCCCAGCAAACAGTGGTGCTACTCATTTCAAGTCATTCTTTATATTAAGGAGGTTACCTGTGGTTTAGATAATTGTGGTGCCATTGGTCAAATACCAATTACACAGACTATTGCACTTGCTGATCCTTACTAGTATATCGAAACTGTTTATGAACTAACCTTCAGAGTTGGCTTCTATACATGTCTGGCTGCACTTTCACTCATTACTTACACTTCAAACAGTATTATACAGTATGATAGGCAGCTGTCTATCTATTCTAACAGTGTTTAAGTGGCATTTTTGTACACAGATCAGGCTCTTAAAAACTTTTTGTGCTTACTAACGCATGAGGGAGAGCGGGATCAAAAACTGTGATTATTATATGTCATAAATGT

Function

symbol description
acap3 Predicted to enable GTPase activator activity and metal ion binding activity. Predicted to be involved in regulation of catalytic activity. Predicted to act upstream of or within neuron migration and regulation of neuron projection development. Predicted to be located in growth cone.

GO: NA

KEGG:

id description
K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01833609_01860272.mRNA True 3648 mRNA 0.48 22 1833261 1860953

Neighbor

gene id symbol gene type direction distance location
CI01000001_01762809_01771029 CPSF3L coding upstream 62232 1762809 ~ 1771029 (+)
CI01000001_01748436_01754956 DDX19A, DDX19B, RP11-529K1.3 coding upstream 78305 1748338 ~ 1754956 (+)
CI01000001_01668334_01670035 CAMK2N1B coding upstream 162236 1667762 ~ 1671167 (+)
CI01000001_01656726_01659321 MUL1B, MUL1 coding upstream 173831 1656057 ~ 1659430 (+)
CI01000001_01589727_01595957 NA coding upstream 236972 1589727 ~ 1596289 (+)
CI01000001_01868471_01873459 UBE2J2, UBE2J2.L coding downstream 7518 1868471 ~ 1873519 (+)
CI01000001_01878297_01894123 HIPK1A coding downstream 17344 1878297 ~ 1896084 (+)
CI01000001_01918301_01923330 NA coding downstream 57050 1918003 ~ 1923379 (+)
CI01000001_01955349_01972242 ZBTB39 coding downstream 94396 1955349 ~ 1973010 (+)
CI01000001_02009224_02019961 SPRYD3 coding downstream 146141 2007094 ~ 2020191 (+)
G13763 NA non-coding upstream 52902 1780156 ~ 1780359 (+)
G13761 NA non-coding upstream 54504 1778385 ~ 1778757 (+)
G13697 NA non-coding upstream 128824 1702984 ~ 1704437 (+)
G13574 NA non-coding upstream 150138 1682764 ~ 1683123 (+)
G13778 NA non-coding downstream 41318 1902271 ~ 1907118 (+)
G13721 NA non-coding downstream 68551 1929504 ~ 1933413 (+)
G13789 NA non-coding downstream 78157 1939110 ~ 1939319 (+)
G13791 NA non-coding downstream 114010 1974963 ~ 1975198 (+)
G13726 NA non-coding downstream 120674 1981627 ~ 1983612 (+)
G13051 NA other upstream 788109 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1341204 483853 ~ 488825 (+)
G12614 NA other upstream 1522320 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1755295 3618075 ~ 3621451 (+)
G15794 NA other downstream 3200265 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3425796 5279837 ~ 5287698 (+)
G15995 NA other downstream 3850932 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5671619 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022553 acap3a coding NC_007134.7 CM002907.2 36888913 ~ 36934944 (-)
bowfin (Amia calva) AMCG00002003 NA coding CM030136.1 CM030136.1 133459 ~ 152192 (-)