LOC122362575


Basic Information

Item Value
gene id LOC122362575
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17129922 ~ 17171335 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU187377
AAGAGGCGGCGCATCGCGCGCTCGCTCGTCTGTGCAGCGAGTTTGAGTTCCGATCCTcttcttcctcacacacacagagagagagagagagagagagagagctgaaccTGCAGACACTTTCGAGCGCGCACCGCAGACGCGTCCACACTTCGCGCTTTCTCTTCGCCGAGACTCACAAAGGAAATACATCCGACCAGACGCGCGGAGACGCGCCGAGACCGAACCGAGCCGAAGCGGATCCGGAACCGGATCGGGCAACAGGAGGGTCTCGAACACAGTCCAACTGGATGTTGCGTCGCGCTTTCCGTGGTGCTGAAATGATCTGATCTGCTCTCAGTCcgaatcatcatcatcatcatcatctgcacAGCGGTGTCTTCGCTTCTGAGCTGAGATGCTCTTCGTGGATTGTAAGATGGTGGACGTTCTTCGCGGTCGGAGGAGGCTGCGGGTGTCCGTCTGCAAGCCGCCCTGCTCCTTCTGGTTTCTGCTGCTGTTCGGGGTCGGAGGACTCGTTCTCTTCATCCATCTGCAGGATCTGTCCGATATGGTGCTTCAGCAGGCCCCAGGTAGGAAGAAGCGGTCAATTACGGTCAACTCTCAAAACTCATTCAGGCTGCGATGCATCACTTTGAGCGTTCGGCAGCGTTTTGGAGACGACCGTTGGCTTTTGGACTGTGGTTTGAGGCTTTTCTCAGGCTTGCGGATTgagaaaatactgtttttgcCAGCCATGAAGCTATATTTTGCGTTGCTGCGataaaaaagcatatatttttgtttctcgGAACGAGTTCTTGAGCTGATTTGTCCTGCAGATTTAGCGCTTTGTCACTCGTACGGCAGCCAGTCTCTGTGCAACGCCATCTGTCACGAAAACATCCGCAACCATCATGATTTTGctcttattttagttt
>TU187378
AAGAGGCGGCGCATCGCGCGCTCGCTCGTCTGTGCAGCGAGTTTGAGTTCCGATCCTcttcttcctcacacacacagagagagagagagagagagagagagctgaaccTGCAGACACTTTCGAGCGCGCACCGCAGACGCGTCCACACTTCGCGCTTTCTCTTCGCCGAGACTCACAAAGGAAATACATCCGACCAGACGCGCGGAGACGCGCCGAGACCGAACCGAGCCGAAGCGGATCCGGAACCGGATCGGGCAACAGGAGGGTCTCGAACACAGTCCAACTGGATGTTGCGTCGCGCTTTCCGTGGTGCTGAAATGATCTGATCTGCTCTCAGTCcgaatcatcatcatcatcatcatctgcacAGCGGTGTCTTCGCTTCTGAGCTGAGATGCTCTTCGTGGATTGTAAGATGGTGGACGTTCTTCGCGGTCGGAGGAGGCTGCGGGTGTCCGTCTGCAAGCCGCCCTGCTCCTTCTGGTTTCTGCTGCTGTTCGGGGTCGGAGGACTCGTTCTCTTCATCCATCTGCAGGATCTGTCCGATATGGTGCTTCAGCAGGCCCCAGGTCATGGGAGTTTTGCTTGATTTCATTTGGCTCATTTGCCTTTCCTCAGAGACGGCGAGGAACTGAAAAGGAATTTTCTTTGAtactgttttcaaatgaaacacattttcaatgaagaaagaaaaaaggattaTCCTGAAGTGTTCAGAGGATTGTAAAGCCGCTCTCAGCCGGGGCTCAGGAACACCGCAGCCTTTCTGCTGCTGAACTGGATCAGATGGAGGGAATGAAGGttatataaaagcatttgcAGCTGAACTCCGGCGCTTCTGTTCCTCTTTAGTGTTTCTGAACACTCTTCTGTGCTGTAGATCttcaaagatgaataaatgcatgtctGGGTCAGTAAGACCCTGTTTAACgattttgaaagaagcctcttctgctcaacgagactgcatttatttgatccaaaatgtCATgagataaatattaaaactatagacgtacataaaaatgaacaccataaacaaacaaacgagCAAGCCAAAAAATCACTTTCATTAAACTAATAACGAAAACAGgacacaaatgcacaaatgcaaactataataatatctcaacaatattaaaatatcactaaccaaggctgcatttattttattttaaacagcaaaaatatttttgcaattcacACTAACttatttctatgtaaatatataatcagttgtaatttattgctttgatcgaagctggattttcagcatcattcctccagtcttctgCGTCATAACATCCTTCAAAAATCGCTGTAATATACCGATTTGCTGATCGTTATCAGTGTCGAAAACAGTTgctcttttttatatttcaggaCTCTTGAATAGAAACGGAAATCTGTAACGTTATAAATGCTGCCACGTTTGatcaattttaagaaaaagaaaaatcttcaagaaaaaaCACACCATTTAATGCACAATCCGAACCCAAtaattcactgaaataaatttgcGTCCTCAACATTCATTAAGAGAGGCCCTTTTTTATATCACGTTACGCTACAGTCAAGCTGCTGAAAACAGTTAATAGtgccactatatatatatagtttgtttgCCACGTTCAGTTAATTTGGCTCATTGAGCTACAACACACCGGGAGCAAAGCTTTTACTCTCATTGTTTCTGCTCAAATCTCCCACTCAAATAATTGTTTAAGGACAATCGAGGAATCCTCTGTGAATCGCCATGGGAGCGCCGTCGGAGAAAATTACCCACAAAACTGCGAGCAGGAGCGTTTCCGTGCGCCGTGGGTTAAGAGCGATTTCTCGGCCTCGGCAGGACGCGACACGCTCACAAAGAAGAGTCGTGGCCGTTTCATTCGGCGAATTGAACTTCATTCTTAGAGCGCTCGGATTCATCTCCGCCGACAAAACACAGCCTCCCCGGCCTCATAAGGTCAAATGCGTTCTCTAACAGCTCTGT
>TU187379
AAGAGGCGGCGCATCGCGCGCTCGCTCGTCTGTGCAGCGAGTTTGAGTTCCGATCCTcttcttcctcacacacacagagagagagagagagagagagagagctgaaccTGCAGACACTTTCGAGCGCGCACCGCAGACGCGTCCACACTTCGCGCTTTCTCTTCGCCGAGACTCACAAAGGAAATACATCCGACCAGACGCGCGGAGACGCGCCGAGACCGAACCGAGCCGAAGCGGATCCGGAACCGGATCGGGCAACAGGAGGGTCTCGAACACAGTCCAACTGGATGTTGCGTCGCGCTTTCCGTGGTGCTGAAATGATCTGATCTGCTCTCAGTCcgaatcatcatcatcatcatcatctgcacAGCGGTGTCTTCGCTTCTGAGCTGAGATGCTCTTCGTGGATTGTAAGATGGTGGACGTTCTTCGCGGTCGGAGGAGGCTGCGGGTGTCCGTCTGCAAGCCGCCCTGCTCCTTCTGGTTTCTGCTGCTGTTCGGGGTCGGAGGACTCGTTCTCTTCATCCATCTGCAGGATCTGTCCGATATGGTGCTTCAGCAGGCCCCAGAGAATCCCGCCGAAATCCGCTTGTATCGGAGAAAACGCTAGCAGTGTGAAGCCTCCCAGAATGCAACAGGCTTCCGGTGATTCTCGGGGTCAAAGGCTGTCGCTTTCGCAATGCCATAAAGTCATTAGCACgggaaaaacaaatgtaaaaagcgGGAAGTCGAGCTTCAGTAATCCGTCCATCTGTCTGTGTTCGTGAAACTCAGTTTAATTAAAGCTCACTGATGACCCTCAGCTCGGACTCAGACGACGCTTCTCAAACAGTCTTCGGTTTCTCCTCCTTTCATTGGACCGCCTCGGCTCCGGAGGATCTGTAAACACAGACGTGAGCAGTTTGTCCCTAATGTGAAAACAGCAGACGAGTATTGACAAGCGCTCCACAAGGTGTAGATAACAAACcccagcgtgtgtgtgtgtgtgtgtgtgtgattagtTAGTCTTGCCAAGTGTAGCAGAAACTCTGCTTTATTTTGACGCTTATTATTGTTGGAGCAGGTCAGCGTCCACTAGAGGAGAACAACAGTAGACATTTAGGAATgcctttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctttgggACCTCAGTTTGTACCATGTTCATCCGAAGTGCAGCCATTCTAAAAGCAATGATCTTtttcaagaaaacatttaaatgagtgtgagtgagtgtgtaaatgtgtgcttgtgtgcgtgtgtgtgtgcgcatgagtgtgagagagtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgagtgagtgagggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgagagagtgtgtaagtgtgtgcttgtgtgtgtgtgtgcgcatgagtgtgagagagtgtgtgtgcgtgtgtgtgtgtgctcatgagtgtgagtgagtgaggtgtgtgtgtgtgtgcgtgtgtgtgtgtgcgcatgagtgtgagagagtgtgtaagtgtgtgcttgtgtgtgtgtgcgcatgagtgtgagagagtgtgtgtgtgtgtgctcatgagtgtgagagagtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgagagag
>TU187380
AAGAGGCGGCGCATCGCGCGCTCGCTCGTCTGTGCAGCGAGTTTGAGTTCCGATCCTcttcttcctcacacacacagagagagagagagagagagagagagctgaaccTGCAGACACTTTCGAGCGCGCACCGCAGACGCGTCCACACTTCGCGCTTTCTCTTCGCCGAGACTCACAAAGGAAATACATCCGACCAGACGCGCGGAGACGCGCCGAGACCGAACCGAGCCGAAGCGGATCCGGAACCGGATCGGGCAACAGGAGGGTCTCGAACACAGTCCAACTGGATGTTGCGTCGCGCTTTCCGTGGTGCTGAAATGATCTGATCTGCTCTCAGTCcgaatcatcatcatcatcatcatctgcacAGcAGCGGTGTCTTCGCTTCTGAGCTGAGATGCTCTTCGTGGATTGTAAGATGGTGGACGTTCTTCGCGGTCGGAGGAGGCTGCGGGTGTCCGTCTGCAAGCCGCCCTGCTCCTTCTGGTTTCTGCTGCTGTTCGGGGTCGGAGGACTCGTTCTCTTCATCCATCTGCAGGATCTGTCCGATATGGTGCTTCAGCAGGCCCCAGGTAGGAAGAAGCGGTCAATTACGGTCAACTCTCAAAACTCATTCAGGCTGCGATGCATCACTTTGAGCGTTCGGCAGCGTTTTGGAGACGACCGTTGGCTTTTGGACTGTGGTTTGAGGCTTTTCTCAGGCTTGCGGATTgagaaaatactgtttttgcCAGCCATGAAGCTATATTTTGCGTTGCTGCGataaaaaagcatatatttttgtttctcgGAACGAGTTCTTGAGCTGATTTGTCCTGCAGATTTAGCGCTTTGTCACTCGTACGGCAGCCAGTCTCTGTGCAACGCCATCTGTCACGAAAACATCCGCAACCATCATGATTTTGctcttattttagttt
>XR_006253132.1
TCCGATCCTcttcttcctcacacacacagagagagagagagagagagagagagctgaaccTGCAGACACTTTCGAGCGCGCACCGCAGACGCGTCCACACTTCGCGCTTTCTCTTCGCCGAGACTCACAAAGGAAATACATCCGACCAGACGCGCGGAGACGCGCCGAGACCGAACCGAGCCGAAGCGGATCCGGAACCGGATCGGGCAACAGGAGGGTCTCGAACACAGTCCAACTGGATGTTGCGTCGCGCTTTCCGTGGTGCTGAAATGATCTGATCTGCTCTCAGTCcgaatcatcatcatcatcatcatctgcacAGCGGTGTCTTCGCTTCTGAGCTGAGATGCTCTTCGTGGATTGTAAGATGGTGGACGTTCTTCGCGGTCGGAGGAGGCTGCGGGTGTCCGTCTGCAAGCCGCCCTGCTCCTTCTGGTTTCTGCTGCTGTTCGGGGTCGGAGGACTCGTTCTCTTCATCCATCTGCAGGATCTGTCCGATATGGTGCTTCAGCAGGCCCCAGAGAATCCCGCCGAAATCCGCTTGTATCGGAGAAAACGCTAGCAGTGTGAAGCCTCCCAGAATGCAACAGGCTTCCGGTGATTCTCGGGGTCAAAGGCTGTCGCTTTCGCAATGCCATAAAGTCATTAGCACgggaaaaacaaatgtaaaaagcgGGAAGTCGAGCTTCAGTAATCCGTCCATCTGTCTGTGTTCGTGAAACTCAGTTTAATTAAAGCTCACTGATGACCCTCAGCTCGGACTCAGACGACGCTTCTCAAACAGTCTTCGGTTTCTCCTCCTTTCATTGGACCGCCTCGGCTCCGGAGGATCTGTAAACACAGACGTGAGCAGTTTGTCCCTAATGTGAAAACAGCAGACGAGTATTGACAAGCGCTCCACAAGGTGTAGATAACAAACcccagcgtgtgtgtgtgtgtgtgtgtgtgattagtTAGTCTTGCCAAGTGTAGCAGAAACTCTGCTTTATTTTGACGCTTATTATTGTTGGAGCAGGTCAGCGTCCACTAGAGGAGAACAACAGTAGACATTTAGGAATgcctttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctttgggACCTCAGTTTGTACCATGTTCATCCGAAGTGCAGCCATTCTAAAAGCAATGATCTTtttcaagaaaacatttaaatgagtgtgagtgagtgtgtaaatgtgtgcttgtgtgcgtgtgtgtgtgcgcatgagtgtgagagagtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgagtgagtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187377 False 917 TUCP 0.53 2 17129922 17164757
TU187378 True 1996 lncRNA 0.44 3 17129922 17167921
TU187379 False 1696 lncRNA 0.52 3 17129922 17171335
TU187380 False 920 TUCP 0.53 2 17129922 17164757
XR_006253132.1 False 1297 lncRNA 0.51 3 17129970 17170984

Neighbor

gene id symbol gene type direction distance location
LOC122362967 NA coding upstream 30360 17079059 ~ 17099562 (+)
LOC122362752 LOC107665215,LOC107595393 coding upstream 60103 17067094 ~ 17069819 (+)
LOC122363001 NA coding upstream 158558 16958824 ~ 16971364 (+)
ulk3 ulk3,LOC107665498,LOC107681021,LOC107595383 coding upstream 300568 16819287 ~ 16829354 (+)
larp6a larp6,LOC107712978,LOC107595350,LOC107739963,LOC107576037,LOC103354325 coding upstream 340249 16780682 ~ 16789673 (+)
unc13c unc13c,LOC107554226,LOC107665324,LOC108411445 coding downstream 154631 17325966 ~ 17354848 (+)
ompa omp,ompa,LOC107735103,LOC107660685 coding downstream 253819 17425154 ~ 17425977 (+)
LOC122322924 NA coding downstream 265816 17437151 ~ 17440065 (+)
lrch3 lrch3,LOC107735844 coding downstream 285755 17457090 ~ 17482180 (+)
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding downstream 327194 17498529 ~ 17500517 (+)
G126881 NA non-coding upstream 96582 17031550 ~ 17033340 (+)
G126879 NA non-coding upstream 106552 17021386 ~ 17023370 (+)
G126875 NA non-coding upstream 112397 17015532 ~ 17017525 (+)
G126867 NA non-coding upstream 114597 17013758 ~ 17015325 (+)
G126865 NA non-coding upstream 154537 16973711 ~ 16975385 (+)
G126893 NA non-coding downstream 670 17172005 ~ 17172305 (+)
G126903 NA non-coding downstream 85476 17256811 ~ 17257363 (+)
G126906 NA non-coding downstream 106871 17278206 ~ 17278585 (+)
G127103 NA non-coding downstream 273626 17444961 ~ 17446064 (+)
G127110 NA non-coding downstream 278136 17449471 ~ 17449801 (+)
G126884 ctxn2 other upstream 52763 17074194 ~ 17077159 (+)
G126820 NA other upstream 311523 16753709 ~ 16818399 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 858655 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 1074295 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 1176269 15950982 ~ 15953653 (+)
LOC122322904 NA other downstream 132434 17303769 ~ 17309158 (+)
G127098 NA other downstream 239350 17410685 ~ 17411593 (+)
serp1 NA other downstream 282819 17454154 ~ 17455657 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other downstream 637266 17808601 ~ 17814422 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other downstream 712283 17883618 ~ 17887211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012490 NA non-coding NC_007129.7 CM002902.2 1447792 ~ 1559823 (+)