CI01000001_01955349_01972242 (ZBTB39)


Basic Information

Item Value
gene id CI01000001_01955349_01972242
gene name ZBTB39
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1955349 ~ 1973010 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01955349_01972242.mRNA
ATGGACTTGTTGCGAGTAACAGTAAAGGTGCCAGGAAAACGTCTTCATCGCGCTGTCACTCCCGCAAATCTTCTGACTGTAGAAGAGGCATCCAGAACTGGCTTGTCATTTCATAATGATCAAAAGGTGAAACGTTGCCCATCATCTGTGTCTAATAAAGGGTTCAGTGTGGACTCGAGCATTGAGGGGGCTACAAGTCCTCCCTTAGGAAAAGACCACATCCCGTCTTCTCCAATGACTGACAGGAAGAAGAAAAAACGAAACCGAAGTATTAACTTGAAAGGAGACGCAGCAGCTGGACAGGCTGAGGAAGAGGAGAGCACAGACTTCATCATCATATCGAGCACAGGACAGAGCTGGCATTTTGAAGCCCAAAGTCAAGAGGACAGGGACGCCTGGGTTCAGGCCATCGAAAGCCAGATCCTTGCAAGTCTACAAAGCTGTGAGAGCAGAAATAAGGCTCGAAGGAACAGCCAAAGTGAAGCTGTTGCCCTGCAGGCCATTCGAAACGCCAAAGGGAACGACCTCTGTGTGGACTGTGCAGCACCAAATCCAACATGGGCGAGTCTTAATCTTGGTGCTCTAATCTGCATCGAGTGTTCGGGTATACACCGGAACCTGGGGACGCACCTGTCCCGTGTGCGCTCACTAGACCTGGACGACTGGCCCAGTGAACTCACGAAAGTGCTTTCGGCTATAGGCAATCATATGGCCAATAGCATTTGGGAGACCTGTACACAAGGGTGCCAAAAGTTGACACCCGAGGCAACCAGAGAGCAGAGGGAGTCGTGGATCCGTGCCAAATATGAACAGCGGGCATTTGTGTCGCCCTTGCCCGCTCAGTGTTCAGAGGACACAATGTCGACTTGGTTGCTTAAAGCAGTAATCGACAGGGACCTTCCCAGACTTCTGCTGCTCCTCGCGCACAGCACCAAGGACCTGATCAACATCCCGCCTGAAGGAGCAGCGCAGCAGCATCACAGCGCGTTACATGCGGCCTGCCAGCTGGGAGACGTGGTCATGACACAGCTGCTGGTCTGGGATATCGGCAACAACACTGTATTTATAATACTGTACATCCTTGCGGATTCTTCAGAAAAGGGAAAAAGTGCACAAATCCTATTCTACAAAACACAAATTAAGAAACTCACCAAATCCTGGCTTTTGTCAGAATTGCCAGGCATGCGGATCAGGCTGCAGGGCTCTGGCCATGCGGCCCGTCTCCTCTCTGAGCTCAACCGCTGCCGTCTGTCTCGCCTCCTGTGTGACGTCATCCTCCAGGTCGGGGGACGTTCCTTCCCGGCTCACCGTGTAGTATTAGCATGCTCTTGCACGCACTTTAACAGCCTCTTCTCCAGAGGTTCCCGCAACCAGGATGGCGTTCCCACCACCTTCTCTTTGGACTTTGTCTCCGCCACCAATCTCGAGAAGGTGTTGACTTTTATCTACACAGGTGAGATTTTCACAGACTTGATCAATGTGGGAGTGCTTTATGAGTTGGCGGAAAGGCTCGGCGTGAAGGAGTTGGTGAGCGCTTGCCATGCCACCTTTCCTGACCTGCAGAGCTCCAGCTCTAGAGACCCGGTGGCCGATGGGGATACGGAAGGTGATATGGCGTCCGCCAACGCAGTGGCTGCGTCCGTTTGCTCATCCTCTGCAGCATCCTGCTCCTCGCTGTCTTCTTCAGCCGCACCCACACCTGTAACTCCATCTCCGGTTTCTCATGGCAGGAATGGCAGGTTGAATCGCTCCCACTTGGCCACCCAGTCGCCTAAAAACGAAGACATGCAGGTACATTTGGGTTACAACCAGCAGGTGACCAACAAGCTGAGTCCTTCGGACAGTAACCATTGTGCAGATGCTCTTCCTGGCCTTAATTTGCAGCTCAAGACTGAGCAAGAGGATGAAGGAGAAAATGGAGGAAGTAACTCAGTGGACCAGCTTGTTGTTAATGGTAGCAAATCAACGTTTGGGTCTCAGGAACCATGTTCCATCCCTGATTCTTCAGCCCAGCTTGGAGGGGAAACCTGCGCCCCTTCGTCGTCCTCCAGTGACCCCTTGGACAGTTTGCAGCTTGGGGCTGTTACAGGACCAATCAAAGATTCTGATTTTTTTGAGGAAGATCATGCTAGAAAGAGGCACCGCCTACAGGAGGAGCATACGGAAAGTGGTGATCAGTGGCGAGCGCTTTCAGAGGACATAATTGAACTGAGCGACGAGGAGGAGCACTTCATTGTGGAAGAAGAGGACGACGAGGAATTGATGTGCATTGAGAATGGTGAAAACGGGGCATCTCTTGGCCAATTGGCATCATCGCAGCCATGCAAATCGTGCGGGATGCTGCTTCCGGTGGAAAACGGCATCATACGAACTCATGCTGAGACGCACCTCTCGGAAACGGGTTCATGTCTAGTTTGTGGAGCCTCTTTCTCGGATCGTGCTGCTGGTGTCGCACACGCCCTCACACACGTGGGCATCTTGCTCTTCTCCTGCGACGTTTGTGAGCACCAGTTCCGGACCGAGTCTGCATTGATTCACCATAGACGTCAGTCAGCAGCCAAATGCGTCCCTCAAAATCCAGACCAACTGAACGGAGACTCCCAACGGCAAGGAGGGGAACTGCAGTGCACCATTTGTGCTAAATCCATGGCAAATGATTTTAAAGCGGTCAGGGACCATGTTCAGAGCCACGCATGCCTGAGAACATTACGCTGTGGAGTATGCCAGCTGTCTCAGCCCTCTCGATGCGCCCTCCTGTGGCACACACTGACACACCTTTTTCCTATTTACACTTGTCCACAATGCGCCAACCCCTTCCTAGAGAGTGCACTGCTGGAGAGACACCTGTCTGTACACTCAGAGGAAGGAGCATCAGCGAAACAGGGCGACGGCAGTCCGGAAACCAGTGGAGAAGGCCAGGCCGAGCTGCGCTGCTTCCTGTGTCCGCAGACCTTCCCCTCAGAAACTGCGTTTCATTACCATCTCAGCGTGCATTCGAACGAGCTCCAGGGCAGCCAGGTATGGCCAGCCAAACGCAAGGCGGACCAGCTCATCGAGTACTCCTCATCCTCCTCCTCACCTTTGGAGGCAAGTGGCTCGGGTAAACCTGGATTCAACTTGAGTGTGGGATTCAACTTGCAGGACAAAATGGCTCACGGGGCCGTCCCGTTTCCAGCTGGACTCGTACTGAATGGCAACTCCGGTGCTGGCACGGGGCTTAGGGAAAAATTGTATCGCTGCCGGTACTGCGGCAAGCATTTCGCACACTCGGGCGAGTTCACCTACCACCTCCGCATCCACACAGGTGAGAAGCCCTACCAGTGCAAAGTATGCCTGCGCTTTTTCCGTGGCCGATCCACCATGATCTGCCACCTAAAGACGCATTCAGGCGCCCTCATGTACCGCTGCACTGTCTGCGGACTGTTTTTCTCCACACTTAAAATGGTTTCTTCGCACATGGAGCTCCACAAAGACCAGCTGCCGCCCGATTTCAACATCGAGGAGACCTTCATGTATAACGACCACTCTAAAGAGCCCGTCCCCAACCTGGACACCTGAACAACGTCGCCCTCTGAATGCTCCGTCACACTGTGTGCCCACGTTTACTTACTCCGTAAGTTGTTGAGGACAAGTGACCGTAGACTTAGAATGTAATGAAGTGTTTAATGTGATCGTCTTTGTGTTGGTGTCTACAGAATGAGTCCTAAAGACTAAAACTTTATTTTAAAAATGTAGTGCTGATACTTGACCACTTGATGGCAAGAGAGACTGAGCAAAGTTACACTGCCAATCAAATTTTTGGACACACCTCCTCATTTTTTTTTTTTTATCATTTTTTTAAACAGTTTAGAATAATAATAGTCACTAAAGCTATGGAATAAAAAATGAACATATCATAACTATCTTATATTGTAGCTTCTTCAAATTTTTGCCAAGAATGTCATGAAGGTGCAGTGTTTAAACACTATTAAACACTTTTTGGCTGCTTTTTATTCACTATCTGGTCCAACTCGGTCATTTAAAATGACAAATTTTGAAGAAATTCATTGAGTTATTTTTGTCTTTTTCAGCCATTTAAGTATAAGCATTTAGATCAGAAGGTCTTTAAGATCACCACAAACAAATTCAGCCAAATACGTCCAAACTTTTGTGTTGTAGTGTTTTAATAACCAAGTCATTTTAACAGGATATTGTTCCAAGTGCTGATGTGCGATTACCTCTATATACTCTTCCGGCAACTCTATCACAATAAGCTAAAGGTCTGTGGTTATTCTAAGGAAGCACAAAGTAACCTTTGATCTTACACGACACAAGCGCAAGTTGAGA

Function

symbol description
zbtb39 Predicted to enable metal ion binding activity.

GO: NA

KEGG:

id description
K10511 ZBTB39; zinc finger and BTB domain-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01955349_01972242.mRNA True 4326 mRNA 0.50 11 1955349 1973010

Neighbor

gene id symbol gene type direction distance location
CI01000001_01918301_01923330 NA coding upstream 31970 1918003 ~ 1923379 (+)
CI01000001_01878297_01894123 HIPK1A coding upstream 59265 1878297 ~ 1896084 (+)
CI01000001_01868471_01873459 UBE2J2, UBE2J2.L coding upstream 81830 1868471 ~ 1873519 (+)
CI01000001_01833609_01860272 CENB5, ACAP3 coding upstream 94396 1833261 ~ 1860953 (+)
CI01000001_01762809_01771029 CPSF3L coding upstream 184320 1762809 ~ 1771029 (+)
CI01000001_02009224_02019961 SPRYD3 coding downstream 34084 2007094 ~ 2020191 (+)
CI01000001_02084996_02088477 NA coding downstream 111986 2084996 ~ 2089332 (+)
CI01000001_02090800_02101722 CSAD coding downstream 117677 2090687 ~ 2101866 (+)
CI01000001_02106280_02114656 ZNF740B, ZNF740 coding downstream 132969 2105979 ~ 2115251 (+)
CI01000001_02152125_02157921 NFE2 coding downstream 179011 2151932 ~ 2158623 (+)
G13789 NA non-coding upstream 16030 1939110 ~ 1939319 (+)
G13721 NA non-coding upstream 21936 1929504 ~ 1933413 (+)
G13778 NA non-coding upstream 48231 1902271 ~ 1907118 (+)
G13763 NA non-coding upstream 174990 1780156 ~ 1780359 (+)
G13761 NA non-coding upstream 176592 1778385 ~ 1778757 (+)
G13791 NA non-coding downstream 1953 1974963 ~ 1975198 (+)
G13726 NA non-coding downstream 8617 1981627 ~ 1983612 (+)
G13796 NA non-coding downstream 31151 2004161 ~ 2005163 (+)
G13722 NA non-coding downstream 98144 2071154 ~ 2076549 (+)
G13735 NA non-coding downstream 129147 2102157 ~ 2103468 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 284345 1667762 ~ 1671167 (+)
G13051 NA other upstream 910197 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1463292 483853 ~ 488825 (+)
G12614 NA other upstream 1644408 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1643238 3618075 ~ 3621451 (+)
G15794 NA other downstream 3088208 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3313739 5279837 ~ 5287698 (+)
G15995 NA other downstream 3738875 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5559562 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022545 zbtb39 coding NC_007134.7 CM002907.2 36660750 ~ 36670369 (-)