CI01000001_02009224_02019961 (SPRYD3)


Basic Information

Item Value
gene id CI01000001_02009224_02019961
gene name SPRYD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2007094 ~ 2020191 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02009224_02019961.mRNA
ATATATAAAGTTGTGCTGTGGTCATTTCTCCGCAGTTCTTGAAGCCCAACTTAAAAAACACTCCCGATACGCTGCGAAGGTTCTCATTGGCTAAGCGCCTGTCAATCAACTCTTTGACGTCTTTTATTGGTGCGCTGCGTTCATTCCTCCACTGACGCCATCCAGGAAGAACCGCTCTCACTTATGCGAAGTTTGTCAGGTAGCTTAGCTAATGGAGTCGATAGCTAAAAGTAAACACAAGTGGCCTTAGAATGTTATAACGTCTTACCCATTGATATACATAAGGTACGTACGCGACGTCATCATATTTATATACGTTACTCTTTAGTGACTATAGGCATGTAGCGGTTGTGTAATTATTGTATTTTATTTCGAGAAGGCCTCAAAGCTGCTAATAATTTGTTAGCTATGCAAGGTGATTAGCAGTGATTGAAACTATCCTTCTACAGCTAGTATGAGCTTACTACGTAATAATTATTTCGTTTCTGAATTTTCTTCAAGCACGAATTTTATTTTAATAGTATGTGGTTATAATAGAACAGTTTATTGTTGATGTCAGTCTTTACATGGTTAAATACATTGTATTTGGTATTTTTCATGTAGTTTTTTGTCTAACTTGACTGTAAGCTGATTATGAGAATCTAATAATATCTGTGATCTGTTGCTAAATACTGTAGTAAGTGTCACCATGTGATTGACACGACAATTAATGCAAATCTATAATTTTCCTCTGTCATGTCCTGGATGTATGAATGACAGCTGCCACGTTATGTTATCTATTGAGGCCTTTGAGACTGTTAGATAACTCTTCATAGAAGGTATTTATCGCATGCTTCTATAGCCCAAATTTGATAGTCAGGCCCTATAATAATATGTTGTTTGTGACTCATTAGTTGACTCAAGATGATTAAGTATTTAGTGTTGAGTGATGTAGGGGGAAAATATGCATCCCATTTCCAAGACATTGCATAATCTAAAGCAGGGATTCCCAGTAATTTTTATTTTTATTTATTAATTTATTTTGTCAGCTCAGGGGTGCTTAGTTCCTGGAGGGCCATGGTCCTGTAGAGTTTAGCTTCAATGCTAATTAAACGAGCTCAGGTCCTTCAGGATTTATTGGTAACACTTTAGTTTAGGGTCCAGTTGTAGCTATTAACTAGTTGCTTATTAGCATGAATATTACTAGGATATTGGCTGTTTATTAGTTCTTATAAAGTACATAATAATGCCTTATTCTGCATGACCATATTCTACATCCATTAATCCTACCCAATACCTAAACTTAACAAATTAATAACTATTAATTAGCAGTAATTAGGAGTTTATTGAGGCAAAAGTCATAGTTAATAGTGAGAATTGGACCCTAATCTAAAGTGTGACCAAACTATTAATTAATTAGTTAAAAATAACTCTAATTATCACTAATAAATATATTTGTGATAAATAGCCTATATTACTGTTGTAAATTACAATTGTTCTGTAAAATAAAAATAAATTGATAATAATAATAATAATAATAATAATTATTATTATTTTATTTTACAGTACAAGTTACAATACTAGTATTTATATCTTAAATTCTTCACTTTCAAACATTTAAACCCTCAAGCTTTTAATATTTCAAATCGTCAAGCTTTTATTTTGGCAAAATATTGGTCAACTGCCATAAACTTCTGTCCATGTTGGAAATTATGTGACTGTGTAAATAAACTGAACCTGCATTTACTGTGAACCGATTTGATGATCGCGATTTCAGTCTTTTTCCAGTTAATTGTGCAGCCCCATTTGCTCATTTTAATTTTACATTCGATTGAATTAGTTTAAAATGTTTATATTTAATATCCTGTGGTTTCCTTACAAACCTCTCTTTGGGAATCTTGCTCTAAAGGTTAAAAAACTGACAATGAAAACATTACTGAAACATAAAACTGAAATCAACCTTGTGGAGTGGTTGGAAAAGGAGTCAAGTCATATGAAGTGTGCACACTCACAGGCATTATCGCAGTTTGTGAACAGCAAGTCCATTATTACTTCGTCTTCTCGTGTCTTGGATGAGTTACATTTCTCAGATACACAATCCAAAACCTTTAAACCTTACGGCATCTGTTTTCCGCTCCACAGCCCTCTGAGATGGATGACATCAATTTACACTACAGATTCCTGAACTGGCGGCGCAGGATCAGAGAAATCAGGGAAGTCCGCGCAGTTCATTATCAAGAGCGATGCAAACGGATATTGAAGAATGGAGACACGCTAAGTTACCAAGGGAACTCTGATAAAGTTGGCTGCTACGTGGCTCCACGCCCCTTATCAAAAGGAAACTGTTACTTCGAGGTGACCATTATGGATACTGGAGTGAGAGGGACAATTGCTGTCGGGCTGGTTCCTCACTATTACAAACTTGACCATCAGCCCGGCTGGCTTCCGAACTCAATTGCTTACCATGCTGATGATGGGAAGCTGTACAACGGCAACTCTGTCGGTCAGCAGTTCGGTCCTAAATGTAACCGGGGTGACCGAATCGGTTGCGGTATCTATGCAGACTCTTTCGATGCCGGACTCGTCACTGTGTTCTTCACAAAGAATGGCAAGGAGGTGGGGTCAGTGGTGGTGCCGGTGGTTCCAGATGGGCTTTTCCCTGCCATTGGCATGCACTCCCTCGGCGAGGAGGTACGGTTGGACCTGCAGGCGGAATGGGGTTCAGAGGAGGAGGACAGCGTCATGATGGTGGACAGCCATGAGGACGAATGGGCACGCCTGTATGATGTCAGAGTCAGTGGCACGGTCATGAAAGCATACAGCATAAAGTGCCGCACTGTCGTTATGCTTTACTGGGTTGATGGCATGAACTGGGCAGCGCAGGCCAGAACTGGCACTAGACCAGCTTGTAAAAACTCAATAAGAGGACTTACGGGGTGCCAAGGGAATCTTTTTGCCTTTTTAAAATGTGGTTGAAGGTTTTCTCAGCTGTGTGCCTTCTCTGTGAGTCCTGTTAGCTTGGCGAGAAGGTGTCCCAAGACTTATAGAGTCTGCTGATAAGGGCATGTTTTGACAAGATGAAACCAAGTGCGAATGGCCCATGGTTTAGTCTCTACATTAGTCACCATCAGGTATGTTTCTTTGAGAATTGGCGATCTCCCTACAAGATGGATTTTGTGCAAAGCACTCGTTGCCGTATGCTAATA

Function

symbol description
spryd3 Predicted to be involved in cell surface receptor signaling pathway and cytoskeleton organization. Predicted to be active in cytoplasm. Orthologous to human SPRYD3 (SPRY domain containing 3).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02009224_02019961.mRNA True 3185 mRNA 0.39 6 2007094 2020191

Neighbor

gene id symbol gene type direction distance location
CI01000001_01955349_01972242 ZBTB39 coding upstream 34084 1955349 ~ 1973010 (+)
CI01000001_01918301_01923330 NA coding upstream 83715 1918003 ~ 1923379 (+)
CI01000001_01878297_01894123 HIPK1A coding upstream 111010 1878297 ~ 1896084 (+)
CI01000001_01868471_01873459 UBE2J2, UBE2J2.L coding upstream 133575 1868471 ~ 1873519 (+)
CI01000001_01833609_01860272 CENB5, ACAP3 coding upstream 146141 1833261 ~ 1860953 (+)
CI01000001_02084996_02088477 NA coding downstream 64805 2084996 ~ 2089332 (+)
CI01000001_02090800_02101722 CSAD coding downstream 70496 2090687 ~ 2101866 (+)
CI01000001_02106280_02114656 ZNF740B, ZNF740 coding downstream 85788 2105979 ~ 2115251 (+)
CI01000001_02152125_02157921 NFE2 coding downstream 131830 2151932 ~ 2158623 (+)
CI01000001_02166796_02171151 CBX5 coding downstream 146605 2166796 ~ 2172179 (+)
G13796 NA non-coding upstream 1931 2004161 ~ 2005163 (+)
G13726 NA non-coding upstream 23482 1981627 ~ 1983612 (+)
G13791 NA non-coding upstream 31896 1974963 ~ 1975198 (+)
G13789 NA non-coding upstream 67775 1939110 ~ 1939319 (+)
G13721 NA non-coding upstream 73681 1929504 ~ 1933413 (+)
G13722 NA non-coding downstream 50963 2071154 ~ 2076549 (+)
G13735 NA non-coding downstream 81966 2102157 ~ 2103468 (+)
G13812 NA non-coding downstream 123466 2143657 ~ 2143868 (+)
G13813 NA non-coding downstream 127010 2147201 ~ 2147756 (+)
G13815 NA non-coding downstream 129687 2149878 ~ 2150195 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 336090 1667762 ~ 1671167 (+)
G13051 NA other upstream 961942 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1515037 483853 ~ 488825 (+)
G12614 NA other upstream 1696153 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1596057 3618075 ~ 3621451 (+)
G15794 NA other downstream 3041027 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3266558 5279837 ~ 5287698 (+)
G15995 NA other downstream 3691694 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5512381 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022542 spryd3 coding NC_007134.7 CM002907.2 36497518 ~ 36592436 (-)