CI01000001_02057429_02071506 (LIMA1A)


Basic Information

Item Value
gene id CI01000001_02057429_02071506
gene name LIMA1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2056814 ~ 2071506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02057429_02071506.mRNA
TCTCCGGAGAAGTCGACTCCTTCCCTGCGCAACAACAATCTGAGTGTCCTAAAGCAGCTCTGGGAACAACCAGCCGAAACGCCTACATCTCCAGAACCCAAAACGCACTCAAGACAGAGGGAGAACCATCAGCAGCAGTCCTTAGAGCCCAGTGTTGACACTCCACTGGAATCCACTGACATCCAGCTGTTGAGTGACAGTGACGAGCCGATGGAGAAGTGGACGCAAAGAGATGTGGAGACCTCCGGGGCTGTGCCCATCGAAAAGCCCACTGTGCCTCTCAACAGCCTGAAGATGATGTTTGAGAAAGGAGAGACCATTCACAACGTGTCCAGAGAATCTGGGAAAACAGGAGACAGTGGATCTGAGAATATGGAACCAGGAGATAGAGAAAGTCTTGACTCTGGAGTCAAAATGATGGAGTCAACCCCTCTCAGGGACAGAATGGCCATGTACCAGGCAGCTGTGACTAAGCATGATTTCCCTTCCTCCCCCACTTGCTCTGAATCCAACACTTTGAAAAGTCCCACTGCAGACAGGAATGGCTCTGTTATAAGTCCTGAACAAAACCAGTCTAAAGCTGTTAGGAAGTTCCGTTTGCCTGTCCGTGAAACCTGTGTGATGTGCCTTAAGACTGTGTACCCGCTAGAGAAACTTGTTGCGAATCAGCAGATTTACCACAACACCTGCTTCCGCTGTGCCTACTGCAACACTAAACTCAGTCTGGTGAACTATGCTTCTTTGCACAACAACGTCTACTGCAAGCCACACTTCTGCCAGCTGTTTAAAGCCAAGGGCAACTATGATGAGGGTTTCGGACACCGACCCCATAAGGAGCTTTGGGAGACTCGAGGAGAAGGAACCGAGGAGCAAGTGAAGCTGTCACCTCAAGAAACAACCTCCAGCCCAACAGTAGAGGAGTCTCCACTGGTTAAGGTTAACGTGCTTGCGGCCACTTTAGAGACCCGAACCCAGGCCGCCTCTGAGAGGGTGGAGAAGCCACTGGAGATGGGACGACTCAAGATATCCTGGCCTCCGCAGACAGAAGGGGATGAAAGCGCAACCCATGTGTGTGCAGCTACTGACAGCAGTGGCATCAAACCCATCCGCCCGAAATGGCCTCCAGAGGGCGACTCTGTATCAAACAACTCAGACCAATCTGATCTTCCAAAGATTCGCAGGAGCGTTTCACTCAAGGAGAGAAGCAAACCATTTTCCATCTTCAGCTCTGCCCCAGTCACTCAACCCAACAAGAGATGCCAAAGATCTCCTTCAAATGAGAAGCCAGACTCGGAGGAGGAAATCTCACCGGACAACAGTCCTCCATTGTCGCCCGAGAGCGAGTCTGGGCTGGATCCCGAGGAGAACCAGGCCTCACAAGATGTGGGCTTCTGGGATGGAGAGGAAGCTGAGGAAGATAGAGCTGATGTCTCCGTGGAGGACCTCATTAAGAGGAACCGTCATTACTACGACGAGGATGAGGATGATGTGGTCTGAGTGATAGATTAGATGTCCGTGGACTTTAATTTCTCAGAAGCACCAGCGTATTTTCATGTAGTCTCCGTTGTAGGTCTCTGTCTGTCTTTTGTGCAGTTTTTTTCATGTCTTCAGCTTTTACATGTGCCTATAAATGTAAATGAACTAAAAACTAAGTAGTTGTCAGGAAGGTTTCTCTAGTCTAGACAATACACTAGAGCTCATACAGTCTCTTCAGGCCTAGTTTTATGAAATTTTAATTTGTTTGGTACTTTTTCTATATTTTATATAATAGATTAGAATATCTTATTCTGCTGCTGTTCAATTTAAAAATGTATGCATTTCCAAACAACTGAAAAGAAAAAATGTTTTTGATATTGTTTTAAGAGGTGATTATTAGGCCAATCTTAGTACGGTTAGTTCAATCACCCATCTTTTTTCACACAAGTGGTCTATCACTACTGTAATGCACTTGAATGTACTTTATGTTAAAACACGCCCTGGCTGTACCACATTTGATTGAATTGGCAACCTTTCAATGTTTTATTGCAAAATTGTATTATTTAACTATTTTAAATGTCACTTTTTTTTTATCATGGGACCAAATATCATGTAATACTTTTTGTTTCAAATAAA

Function

symbol description
lima1a Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly. Predicted to act upstream of or within negative regulation of actin filament depolymerization. Predicted to be active in actin cytoskeleton and plasma membrane. Is expressed in several structures, including blood vessel; hindbrain neural plate; midbrain neural keel; nervous system; and periderm. Orthologous to human LIMA1 (LIM domain and actin binding 1).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02057429_02071506.mRNA True 2112 mRNA 0.46 8 2056814 2071506

Neighbor

gene id symbol gene type direction distance location
CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding downstream 53886 1998128 ~ 2002928 (-)
CI01000001_01976950_01992032 GPR182, PIP4K2CA, PIP4K2C coding downstream 63253 1976716 ~ 1993561 (-)
CI01000001_01932927_01933914 TSPAN31 coding downstream 122900 1932621 ~ 1933914 (-)
CI01000001_01902970_01917410 MARCH9 coding downstream 139360 1902429 ~ 1917454 (-)
CI01000001_01873684_01874535 NA coding downstream 182279 1873640 ~ 1874535 (-)
CI01000001_02126257_02127537 NA coding upstream 53559 2125065 ~ 2127567 (-)
CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding upstream 70054 2141560 ~ 2142986 (-)
CI01000001_02159372_02162554 HNRNPA1, ROA1 coding upstream 87653 2159159 ~ 2162554 (-)
CI01000001_02173311_02179118 NA coding upstream 101264 2172770 ~ 2180987 (-)
CI01000001_02236985_02242725 HOXC1A coding upstream 165076 2236582 ~ 2243993 (-)
G14213 NA non-coding downstream 49765 2005295 ~ 2007049 (-)
G14217 NA non-coding downstream 51751 2004161 ~ 2005063 (-)
G14267 NA non-coding downstream 80947 1975195 ~ 1975867 (-)
G14261 NA non-coding downstream 134574 1921899 ~ 1922240 (-)
G14259 NA non-coding downstream 135968 1920595 ~ 1920846 (-)
G14216 NA non-coding upstream 30650 2102156 ~ 2102501 (-)
G14198 NA non-coding upstream 31083 2102589 ~ 2103469 (-)
G14293 NA non-coding upstream 46849 2118355 ~ 2118566 (-)
G14297 NA non-coding upstream 71635 2143141 ~ 2143365 (-)
G14300 NA non-coding upstream 77208 2148714 ~ 2148937 (-)
G14228 NA other downstream 336 2055974 ~ 2056478 (-)
G14219 NA other downstream 61916 1994210 ~ 1994898 (-)
G14104 NA other downstream 289356 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1659681 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1799297 238241 ~ 249437 (-)
CI01000001_02258523_02262621 NA other upstream 187883 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2320808 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2404778 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2497576 4725927 ~ 4728210 (-)
G15736 NA other upstream 2729395 4800901 ~ 4801395 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021876 NA non-coding NC_007134.7 CM002907.2 36458347 ~ 36488629 (+)