CI01000001_02084996_02088477


Basic Information

Item Value
gene id CI01000001_02084996_02088477
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2084996 ~ 2089332 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02084996_02088477.mRNA
ATGGATGGACCAGTAGCTGGCACCAAGCTCATTCAGAGACACAAGCCAGAGCTACTGGAGGCCCTGATGGGAGATACAGAGTTCCTGCTTCAGCATTGCCATGCCAGTGGAATACTGTCCAACAATGAGTACAACAACATCAAAGACATTAACATGCGTTCAAAGCAGGTACGGGACATCTTGGATTATGTGATTCACAAAGACAACAAGCATGCTCTGAGTTTCCTCAAATTGCTGAAAACACAAGACATGCAAGAGACATTTCCTAAACTGCAATTCCTTCAAAAACTACAAATCAACAAACGCAAGACAACAAAAAATACAGAGACGACAGCCAAACGAAGGCAGGAGGTGTTGGAAAACGACAATCTGCAGGAGCAGCTGTCTATAATCAACTCCAGGATGGTGAGTGAGAGGGAGATGATGATGGTGGCCGGCTACATTGGGAACAACTGGAGGCAGGTGGGAATAATGGCACTAGGTATGAAGACCACCACCCTTCAGCAGATAGAGGAGGATAACAAACTACACAAAGAGCGCGTTTTTGCCATGCTGCGAAAATGGAGCATGCGTGAGAGGGACCAAGCCACAGCAACTCGACTCTATTCCCTCCTAACCCAAGAGGAGTACGACGTAGACCCCCAAAATATCAACTTCCTAATGGAAAACAACTGAGCCGACAGAGAGGACTGCTTTTATGTAGCACTTTGCATGTGCAGACATGCAGGCATACCACTAGAGGGAGCAATAACTGCTATTCAGTTACATTGGAAAAATGTTTACTTCTCATTTTTGTGTTTGTTTGTTTGTTTGTTTGATTAGAAAAGGCCATGTATAAAGTCAGCTAAAAGCTTGAAATAATATGGAAACGTTTAAACGCAACAAGCTAAAATGCGGGTATTTAAAATATTTTCCTAAAACTCTTGAAAATATGCTTACATTTTTTTTAAAAGAATGTAATGCATAAATTAATTTTTTAAAGGGGCAGGACTGAATTAACTGTCACAGCGTGAAGTTTTTTTTTTTTTATTGATGTGTTTTTTTATGGCATTATTACTTAATTGTTTTTCTGTTAAGCTTATTTTCATGTGAGATCAAGCTCCATTCCTACTCTTTAAATTGCACTTCACTGTGTGTGTGTGTGTGTGCTTTCTGAAATATAACCACATCAGCCGAGCCTGATTTGTACCGTAGCATTCCATCTCAATACATTCTACAGAATAATGCATTTCCCTTTTTAAGTAAATGAATGTGAAAGCTTTTATCTAAGTCTTAAAACTTGAACCGATTCCATGAACAGATAAGGAAGACTCATGTTTATGATGGAAATTTACAAAGATTTATGTTCCAATAGAGGCCGCTATCTGGCAACATAACGGCGACCTTCGCTCTCTCGGCAAGTATCACGTTGTTTCACCCTGATGAATTTTCACCCTGGTGTTTCACCCTTGTTCACCCTTGTTTTGCATGCCAAGCAGGTGATAGGATTGGAGGCGGAGCTTTGTACAATTCCATTGCACAGGCCAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02084996_02088477.mRNA True 1530 mRNA 0.41 3 2084996 2089332

Neighbor

gene id symbol gene type direction distance location
CI01000001_02009224_02019961 SPRYD3 coding upstream 64805 2007094 ~ 2020191 (+)
CI01000001_01955349_01972242 ZBTB39 coding upstream 111986 1955349 ~ 1973010 (+)
CI01000001_01918301_01923330 NA coding upstream 161617 1918003 ~ 1923379 (+)
CI01000001_01878297_01894123 HIPK1A coding upstream 188912 1878297 ~ 1896084 (+)
CI01000001_01868471_01873459 UBE2J2, UBE2J2.L coding upstream 211477 1868471 ~ 1873519 (+)
CI01000001_02090800_02101722 CSAD coding downstream 1355 2090687 ~ 2101866 (+)
CI01000001_02106280_02114656 ZNF740B, ZNF740 coding downstream 16647 2105979 ~ 2115251 (+)
CI01000001_02152125_02157921 NFE2 coding downstream 62689 2151932 ~ 2158623 (+)
CI01000001_02166796_02171151 CBX5 coding downstream 77464 2166796 ~ 2172179 (+)
CI01000001_02393859_02406849 CALCOCO1A coding downstream 304527 2393859 ~ 2407235 (+)
G13722 NA non-coding upstream 8447 2071154 ~ 2076549 (+)
G13796 NA non-coding upstream 79833 2004161 ~ 2005163 (+)
G13726 NA non-coding upstream 101384 1981627 ~ 1983612 (+)
G13791 NA non-coding upstream 109798 1974963 ~ 1975198 (+)
G13789 NA non-coding upstream 145677 1939110 ~ 1939319 (+)
G13735 NA non-coding downstream 12825 2102157 ~ 2103468 (+)
G13812 NA non-coding downstream 54325 2143657 ~ 2143868 (+)
G13813 NA non-coding downstream 57869 2147201 ~ 2147756 (+)
G13815 NA non-coding downstream 60546 2149878 ~ 2150195 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 413992 1667762 ~ 1671167 (+)
G13051 NA other upstream 1039844 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1592939 483853 ~ 488825 (+)
G12614 NA other upstream 1774055 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1526916 3618075 ~ 3621451 (+)
G15794 NA other downstream 2971886 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3197417 5279837 ~ 5287698 (+)
G15995 NA other downstream 3622553 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5443240 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022541 zgc:174906 coding NC_007134.7 CM002907.2 36443022 ~ 36449111 (-)