CI01000001_02090800_02101722 (CSAD)


Basic Information

Item Value
gene id CI01000001_02090800_02101722
gene name CSAD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2090687 ~ 2101866 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02090800_02101722.mRNA
GTATATGAAGGCTGGATCCTGCATTAAAGCACTGAGGGTCTCGAGGCATCCTTACAACATCAGATACAGTAGAACTTCACGTGCTCAGTGCAGAAAGGACAGAAAACATCACAATGAGTTCATCTAAAGATCAAGCTAGACCAATTTATGGACTTAGGCTGGTCCAGTCTGGTCTCCATGATGGATCAGCTGGAATACCAGCTGATAGGGGCGGGATCAAACTGGTAGATTTTGATCAAGCTGAATATTTGAATGGCAACGTCCACCTGGAAGATTCAGACATGTACGAGTCAGAAGGGAAGCTGTTCCTTACTGAGGCTTTCAAAGTGATTATGGAAGATATACTTCACAAAGGAACTGACCTGAAGGAGAAGGTGTGTGAGTGGAAAGATCCAGATCAACTGAGTGCTCTTCTGGACCTCGAACTCAGAGAACATGGAGAATCTCACGATCAGCTATTGCAGAGGGTCCGAGATGTGGCGCGATACAGTGTTAAAACCTGTCATCCTCGGTTCTTCAATCAGCTGTTTGCTGGGGTGGACTACCATGCATTGACAGGACGGCTCCTCACTGAAACCCTCAACACCAGCCAATACACCTATGAAGTGGCTCCGGTTTTTGTCCTGATGGAAGAGGAAGTGCTCTCTAAGCTCCGCTCTCTGATTGGCTGGTCAGAAGGAGATGGGATATTTTGTCCCGGAGGTTCCATGTCCAACATGTACGCCATGAACATTGCACGGTACTGGGCCTTCCCTCAAGTGAAGACACAAGGCATGTGGGCCACACCACGGATGGCTATATTTACATCACAACAGAGTCATTACTCAATGAAAAAAGCAGTTGCTTTTCTTGGTATCGGAACGGAAAATGTTTTCATTGTACAAGTGGATGAGAGTGGCAGCATGATACCAGAGGACCTGGAGGCTAAAATCGTGCAGGCAAAATCACAAGATGCTGTCCCATTTTTCGTTAACGCCACAGCTGGTACCACAGTGCAGGGCGCCTTTGATCCTCTGAACCGCATTGCTGACATAAGTGAAAGAAACGGCATGTGGATGCACGTTGACGCCGCTTGGGGAGGAAGCGTGCTGTTTTCCAAAAAACACAGACATCTGGTTGCAGGAATAGAAAGAGCAAACTCTGTGACTTGGAACCCTCACAAAATGCTTCTAGCGGGCCTGCAGTGCTCTGTGATTTTGTTCAGAGATACCACGAATTTGCTAATGCACTGTCACAGTGCCAAAGCAACCTACTTGTTCCAGCAAGACAAGTTCTACGATACAAGTCTAGATACTGGAGACAAATCCATCCAGTGTGGCCGTAAGGTGGATTGTTTGAAGCTCTGGTTGATGTGGAAGGCAATAGGAACACATGGTCTTTCAGAGCGCGTGGATAAGGCCTTTGCCCTCGCAAGCCTGAGAGGGAAGGAGAACAGTGCGGATTACCAGGAAAGACTATCAAAGGTGGCGCCAGTCATCAAAGAGAGAATGATAAAGCGTGGAACAATGATGGTGGGATACCAGCCCATGGACGAACACGTCAACTTCTTCCGTATGGTTGTTGTTTCACCTCAGCTGACCACCAAGGACATGGATTTCTTCCTGGATGAGATAGAGAAACTAGGGAAGGACCTGTAATTAGTTGGAATATGAATGGTCTACCAATGTCACATTATCCCTTCTCATCCCGTCACTTTTAAATTTGTGATTATCTAAAGGTTGCTAAAACTTATTTTGACTTATGAATAGTACACAATACTGACTTCATTGAAAAAGCATGCA

Function

symbol description
csad Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Acts upstream of or within heart development and taurine biosynthetic process. Is expressed in several structures, including brain; digestive system; pronephric duct; solid lens vesicle; and somite border. Orthologous to human CSAD (cysteine sulfinic acid decarboxylase).

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02090800_02101722.mRNA True 1781 mRNA 0.46 14 2090687 2101866

Neighbor

gene id symbol gene type direction distance location
CI01000001_02084996_02088477 NA coding upstream 1355 2084996 ~ 2089332 (+)
CI01000001_02009224_02019961 SPRYD3 coding upstream 70496 2007094 ~ 2020191 (+)
CI01000001_01955349_01972242 ZBTB39 coding upstream 117677 1955349 ~ 1973010 (+)
CI01000001_01918301_01923330 NA coding upstream 167308 1918003 ~ 1923379 (+)
CI01000001_01878297_01894123 HIPK1A coding upstream 194603 1878297 ~ 1896084 (+)
CI01000001_02106280_02114656 ZNF740B, ZNF740 coding downstream 4113 2105979 ~ 2115251 (+)
CI01000001_02152125_02157921 NFE2 coding downstream 50155 2151932 ~ 2158623 (+)
CI01000001_02166796_02171151 CBX5 coding downstream 64930 2166796 ~ 2172179 (+)
CI01000001_02393859_02406849 CALCOCO1A coding downstream 291993 2393859 ~ 2407235 (+)
CI01000001_02492831_02495337 NA coding downstream 390565 2492431 ~ 2495411 (+)
G13722 NA non-coding upstream 14138 2071154 ~ 2076549 (+)
G13796 NA non-coding upstream 85524 2004161 ~ 2005163 (+)
G13726 NA non-coding upstream 107075 1981627 ~ 1983612 (+)
G13791 NA non-coding upstream 115489 1974963 ~ 1975198 (+)
G13789 NA non-coding upstream 151368 1939110 ~ 1939319 (+)
G13735 NA non-coding downstream 291 2102157 ~ 2103468 (+)
G13812 NA non-coding downstream 41791 2143657 ~ 2143868 (+)
G13813 NA non-coding downstream 45335 2147201 ~ 2147756 (+)
G13815 NA non-coding downstream 48012 2149878 ~ 2150195 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 419683 1667762 ~ 1671167 (+)
G13051 NA other upstream 1045535 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1598630 483853 ~ 488825 (+)
G12614 NA other upstream 1779746 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1514382 3618075 ~ 3621451 (+)
G15794 NA other downstream 2959352 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3184883 5279837 ~ 5287698 (+)
G15995 NA other downstream 3610019 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5430706 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location