CI01000001_02173311_02179118


Basic Information

Item Value
gene id CI01000001_02173311_02179118
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2172770 ~ 2180987 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02173311_02179118.mRNA
ACACACATGGCTCTTTAACAAAGACATTTTCCTTTCCGTGAGAAGCTATACGTCAGTGTTACAGACAGTATTATCATCAGAGGAACAGATTCCATTCTGCCTATGTTTCTTTCTCCATGTGTTTGTTAAACATTTGGACCCTGTTCCCTCTCCATATGATGTGAGTCTCTCTAGAAGGCTAAAGGAAACCAGGTGCGGACAAGCTGAACTCGAGGGGTCAGGAGTGGAAACATGCAACACAAATTTTTATGCACTGTTTTTACTCACAGTCTTCTAAAGATTGCTAATCAAATGCAGCATGTTGAACCGGTTCATAACACTTCGAAGAACCAGCAATGCTCCCAACAAACAAATAGAAAGCTTTGTGGAAGATAAATCCTTTGTGGAAAAGCTCTAGCTGTCAAGACAGACAGCATGGGAGTAAGAGTGTGATTTGAGGAGAGAGAGAGAGAGAGGAAGAGCCAGACAGAGATGTCGTCTGGTGGAGAGACCGTTTGCTCAATCCTCTCATAATTCCTGGATTTCTGCAAGGCCGTTCTGGTTGTATTGCAGAACAAATGGGAAAGACAGGTCTGATGACGGTTTTTCTATTTTTAAAACAATTCAGAATGTGTTTATATATAGCCTACTATATACAGTTCAGTACATACGTTTGCATGGCCCTTTTATCTCCTAATTTATTTTTACAAATATAAGATTTAAAATATTTTTAAAATTGTAATATATGTATGTATATATATAATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTACACCAATCATCAACAATTGTTTACATCCCCTTATTTCTTAATATAGTTATTGAGCATCAATGAATTTTTGAAAGCAGTCTCTTATGCTCACCAAGGCTGCATTTATTTGATCAAAAATACAGTAAAATTGTGAAATAATATTAGAATTTAAAATAAGTGTTTTCTAATTGAATATATCTTAAGATATAATTTATTCCTGTCATGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGAAACATTATTTTTAAAGTTGAAAACAGCTTAATAGTTTTGTGGAAACCCATTTTTTCAGGAATCTTTGATGAATAAGAAGTTCAAAAGAACAGCATTTATTTGAAACAGAAATCTTTTGTTAAAACAATGTAAATATCTTTAATCACCACTTTTGATCAATCTACACTGTCAGAAAAAAGGTATGGTGCTTGTCACTGGGGAAGTACCCTAAGGTACAAAAGAGTACATACTAATACTAATATGTACTTTTAAGGTACTAATATGTACCATTTAGGGGTAAGTAAGGTACAAAGATGTACCTTTTCCCTTTTGTACCTTAGGGTACTGCCCCAGTGACAGCGGCGTACCTTTTTTTCTGACAGTGTAATGCGCCTTTGCTGAATAAAAAAAAGCCACAGACCTCAATTTTTAACGATAGTGTGTATACTGTATATGTGTATACTGTACACTTCCCAGATTATATCATGTGATATTCATTGAATACCATTTCAATAGGACTAATCTAAGGCCAAATTGGATAATTTTTACATTTTTTGAACTCTAAATTCCTCCATCAGATTTATGTGTTAAACCAGATCATGTTGTTTATGAAATTATTTTGAGTTTCAGTGCATGAATGCCTTTCCTGCATGAAAGCCAGGGGATTTCACAGAGATTCAATAGAGGAATCCCTGTCTCAAAGGTCAGCTCTCATCAGTCATTCTCTGACATTTTACGATTGAGATGCATGTGATGAGCTGGCTTTTCCACCAGACAGATGTGCCCGCAGCCCCAGCTGGGTCGTCCTGCACATGGCTGGGCCGTGCTCGATGTTAGATCACAGAGCCCTCTGTTTTCAAACGCTGCCAGATAACACAGGGTCCTCCGGGGATGCAGTAACTCTAGAGGCTCCATTGTGCCATGTCACGCTGCCTGTACTCCAGTCGGTGCAGAACAGCACGCTGTCAGTTAAAATAAGTGGCCGCGGGCCAGCGTCTGAACGTGTCTGTCCTGAATCTCCCTGCCTCCAAAAGCTCCAGCACCAGAATCGGGCGTTCATAGAGAGCTTTGCTATTAAACGCAGCTCTAATAGGCTTTCTCGCCACGCTGTATCTTCTTCCTCCTGCCGGATAGCAAACCTCACACTGTCTATGTCGTCCCCTGCCCCACCCTATCTCGGCTTTTACCTCCGGCCTGTTAAAAATGATATCAGCTCGGGAAGAGATGGGGGTGGAGGAGGACTGGACGTAACGCCAGACTGCTCGCTCTACAGTGGGGGCTGCTGGGGAGAGGTTGGGCTTTGTTTCTCGAAGCTTTGCTGCGCTTTAAACGCAACCGAGGCCCAAAGAGCATTGCTGCGCCATCACGATGCACGGCTCGAACAACAACCCAATAGAGGGGCGATAAGCGTCTCGAAAGGCGTTTTGGATGGTGGTGCAGTGTGGATCGAACACACTGCTGCAGTCTTCCCCTCCCAAACTCCAGCCCTCGACCACAGCTGTTCAGTGGTCCCCTTGACAGCCATCTATTTGAGCTTATGTGCAGAAAAACCCATCGGACCACATGCATCCCAGAAATCTTGCATACAGACTCTATTCGCTGCTTGCAGGCTTTTTCGCCTCAGCAAACATATTCAAAGCGTGCACTCTTTGCTTATTGAGCTGAACCGCTTCCCCTTTTCCCCTTTGGAAAATTCCACTGCCACTGAGGTAGTCGAGAAAACGGTATTAAAGGGAGGGGTTCCGGCTCAGACGCCACCTCTCCTCAACTCTGGACTGTGTGGAGCTGAGGCCATGAAGGAGCTACAAGTCACATTCACAATAGTCCAAATGTCTAGAGATACAAAAGGAAGAGGCTGAACTGGAAGTCTATATAATGAGGCTAAAATCTGAAGGGCAGGGCTAATGCCTATGCAACAGCATACCGTCATCTGAAAGACATAACTGCGATAGAATATCTGTGAAACTGAGCATTACGGGGGGGAATTGTAATGTTTCGCATGGGGAAGTTGCATGAAACTGAGTGAATATTACTGAAATTGTCATTAAACCACATCAAAACTAGGTCAAAATAGAGAAAAGTAGATATGAGCTCATTGAATACAATGAATGATGTATGAATACAATGCGTTCATAAGCCAAATATTTCATTTGAATTAGGATGAAAAGCATTTAAAGTTCAAATATGCCTAAGAATCCTTAATCTTCTAGATTTTAACATGCTATTATTCCTTTAGAATCACTACGCAAACTGTTTTTTAATCAGTAGAAACAAACAGGCAAGAGTTGCTCCATTATGACATCTGCTGGTAAACATCAGCACTGCTTTACAGATCAAACTTGTAACTGCAATGACAACTGAACTAAATGGGATGTTGCATATCTCATTGGTTAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02173311_02179118.mRNA True 3457 mRNA 0.40 5 2172770 2180987

Neighbor

gene id symbol gene type direction distance location
CI01000001_02159372_02162554 HNRNPA1, ROA1 coding downstream 10216 2159159 ~ 2162554 (-)
CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding downstream 29784 2141560 ~ 2142986 (-)
CI01000001_02126257_02127537 NA coding downstream 45203 2125065 ~ 2127567 (-)
CI01000001_02057429_02071506 LIMA1A coding downstream 101264 2056814 ~ 2071506 (-)
CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding downstream 169842 1998128 ~ 2002928 (-)
CI01000001_02236985_02242725 HOXC1A coding upstream 55595 2236582 ~ 2243993 (-)
CI01000001_02258523_02262621 NA coding upstream 77455 2258442 ~ 2263103 (-)
CI01000001_02274875_02276207 HOXC4, HOXC4A coding upstream 93305 2274292 ~ 2276769 (-)
CI01000001_02286306_02287855 HOXC5A coding upstream 105276 2286263 ~ 2288002 (-)
CI01000001_02289890_02291109 HOXC6.S, HOXC6, HOXC6BA, HOXC6AB, HOXC6A, HOXC6AA coding upstream 108103 2289090 ~ 2291744 (-)
G14304 NA non-coding downstream 17887 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 21314 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 23833 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 29405 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 54204 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 186871 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 217168 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 222190 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 289208 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 443320 2624307 ~ 2624520 (-)
G14228 NA other downstream 116292 2055974 ~ 2056478 (-)
G14219 NA other downstream 177872 1994210 ~ 1994898 (-)
G14104 NA other downstream 405312 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1775637 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1915253 238241 ~ 249437 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2211327 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2295297 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2388095 4725927 ~ 4728210 (-)
G15736 NA other upstream 2619914 4800901 ~ 4801395 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G207876 LOC106561706 misc NC_048566.1 CM023220.2 95680851 ~ 95686864 (-)
tiger barb (Puntius tetrazona) G158955 NA non-coding NC_056721.1 CM032090.1 18244923 ~ 18246827 (-)