G128857 (arntl2,LOC107749276,LOC107686234)


Basic Information

Item Value
gene id G128857
gene name arntl2,LOC107749276,LOC107686234
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24444502 ~ 24445199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU190169
TGTTAacgttatttttatataatttatatggaCTACTAAAGAGACCATTTTGAGTCCATTTGAGACAAATTTGAAAAACAGTTAACCAACTATAATCTGAATAACAAATACCTAAAAGTTGTATCCTCTTACAAGTGGTAAATTAAATCtgagttttgaaaagaaaatgcatgccGCCATCTAGTGAGAATGAAGTGCCCATGTACAGTCAACTTACTACGGATCACACCGGACAAGGGAAGGTTATGTGGGTAATTACATAGTGTGGAGCTTGTTTGCACAAAATGACTATGATTATGCACGCAAACAATTGTCAGTCACAAAAATTCACGTTTATGCATACCCGAAACGACTTACCGCTGATCCACGAAAGTGAATTTGCCATCCATGGCGTAGCGGGTGACAAATTCAGTAGGCTTGACCTTGATCTCTCCGTTGGCCTGCGGTAGAGTGTGGGGGTGAATGCGGCCCACTGCTACCAAGCAGCTGAAGTGGGAACTCTCTTTATCTGCCTCGGCCTCCCCCTCCGTGCCCAGCTGGCGCGTGGGCCAGGTGCGCATGTAGCCCGTGCAGTGCACAGTGCAGTACCGCTGTGACTCTGTAGGGGCAGTCAATTAAACAGAGCCAATTTACAGGTGAGCCGAGAGCCAAATGTTCCACCATATGTTGTTAAAGAGGAACACAAAGGTGCACGTTTC

Function

symbol description
arntl2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian rhythm and photoperiodism. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human ARNTL2 (aryl hydrocarbon receptor nuclear translocator like 2).

NR:

description
PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190169 True 698 lncRNA 0.45 1 24444502 24445199

Neighbor

gene id symbol gene type direction distance location
si:dkey-103i16.6 si:dkey-103i16.6,LOC107749280,LOC107664689,LOC107553976,LOC107672161 coding upstream 94345 24338891 ~ 24350157 (+)
si:ch73-62b13.1 si:ch73-62b13.1,LOC107749314,LOC107740436,LOC107672215,LOC107553958,LOC107583921,LOC107664683,LOC108425440 coding upstream 129522 24308176 ~ 24314980 (+)
zgc:153031 zgc:153031,LOC107664682,LOC107583831,LOC107672313,LOC107553959 coding upstream 153043 24287138 ~ 24291459 (+)
cry1b cry1ab,LOC107672239,LOC107553944,LOC107583830 coding upstream 157727 24277282 ~ 24286775 (+)
LOC122362775 cdh13,LOC107722459,LOC107684661,LOC107738387 coding upstream 262960 24134413 ~ 24181542 (+)
slc17a8 slc17a8,LOC107553956,LOC107672209,LOC107686235,LOC107583818 coding downstream 15717 24460916 ~ 24472951 (+)
nr1h4 nr1h4,LOC107749275,LOC107686236,LOC107672305,LOC107740216 coding downstream 29038 24474237 ~ 24488921 (+)
LOC122322915 LOC107553937,LOC107749305,LOC107686321,LOC107686322,LOC107553936 coding downstream 48734 24493933 ~ 24502864 (+)
LOC122322916 LOC107749305,LOC107686322,LOC107553937,LOC107686321,LOC107553936 coding downstream 66933 24512132 ~ 24522487 (+)
ube2na ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding downstream 82012 24527211 ~ 24534508 (+)
G128856 NA non-coding upstream 1343 24442373 ~ 24443159 (+)
G128841 NA non-coding upstream 3970 24436038 ~ 24440532 (+)
G128855 NA non-coding upstream 9122 24435074 ~ 24435380 (+)
G128854 NA non-coding upstream 12693 24431168 ~ 24431809 (+)
G128816 NA non-coding upstream 61790 24345200 ~ 24382712 (+)
G128859 NA non-coding downstream 13520 24458719 ~ 24458934 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding downstream 79328 24524527 ~ 24525054 (+)
G129038 NA non-coding downstream 219252 24664451 ~ 24728979 (+)
LOC122362653 NA non-coding downstream 222285 24667484 ~ 24669844 (+)
LOC122362654 NA non-coding downstream 289988 24735187 ~ 24737012 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 707654 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2005823 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2032545 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3803443 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3843983 20589684 ~ 20600519 (+)
G128858 NA other downstream 4566 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 138646 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 849544 25294743 ~ 25309740 (+)
mt2 NA other downstream 901193 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1476068 25921267 ~ 26174156 (+)

Expression


Co-expression Network