G128863 (si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028)


Basic Information

Item Value
gene id G128863
gene name si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24524527 ~ 24525054 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU190188
GAAGATGTAGAGTCTGGATACACGAGATAACCGCTAAATGTGATGTACGGTCCGACGTTACTGTAGATGGCATAGTGGGGATTCTCCTGAAGAAGCAGGTAGACTGTGTCCATAGGTTTCAGACTGATCATCACGCTCTGGCTTTGAACTTTGCGGCCCTGGTTCTGGTACCCGTCGTATGCCATGGCTTGCACCTCCATCCCGTTCTTCACCAGCATGACCGACAACATCTTTTTCGGGAACTTTCCCACTGTAAATGAGAAGTAGTACGCACCAGGCTGGCGGCAACGGAAAGTGCCCGTCTCTGGATTGAAGTCTTCTCCGATGTTGACTAGAAGGCGGTCAAAGGTCACAATTCGCTGAGTGCCACCCAATACGCTGCTGCTACGCGTGGCGGAAAAGGCAGAGCGCAGGCCTGTTGCCATTGGGCTGATGTTGAATGATGCAACGCAGCCCAGATAGATGATCAGTCCAAGTAGACAGGAAACACATCTGTCTGGTCTCCATGATGCCACACAAGCTGTAGGA

Function

NR:

description
PREDICTED: complement C1q tumor necrosis factor-related protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190188 True 528 lncRNA 0.52 1 24524527 24525054

Neighbor

gene id symbol gene type direction distance location
LOC122322916 LOC107749305,LOC107686322,LOC107553937,LOC107686321,LOC107553936 coding upstream 2040 24512132 ~ 24522487 (+)
LOC122322915 LOC107553937,LOC107749305,LOC107686321,LOC107686322,LOC107553936 coding upstream 21663 24493933 ~ 24502864 (+)
nr1h4 nr1h4,LOC107749275,LOC107686236,LOC107672305,LOC107740216 coding upstream 35606 24474237 ~ 24488921 (+)
slc17a8 slc17a8,LOC107553956,LOC107672209,LOC107686235,LOC107583818 coding upstream 51576 24460916 ~ 24472951 (+)
si:dkey-103i16.6 si:dkey-103i16.6,LOC107749280,LOC107664689,LOC107553976,LOC107672161 coding upstream 174370 24338891 ~ 24350157 (+)
ube2na ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding downstream 2157 24527211 ~ 24534508 (+)
nudt4a LOC107740279,LOC107672310,LOC107553971,LOC107686239 coding downstream 10242 24535296 ~ 24549380 (+)
eea1 LOC107686240,LOC107583815,LOC107672259,LOC107740258 coding downstream 25378 24550432 ~ 24570221 (+)
LOC122362645 itpr2,LOC107672258 coding downstream 65849 24590903 ~ 24659950 (+)
LOC122362651 bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304 coding downstream 146748 24671802 ~ 24675849 (+)
G128859 NA non-coding upstream 65593 24458719 ~ 24458934 (+)
LOC122363046 NA non-coding upstream 78427 24433591 ~ 24446100 (+)
G128857 arntl2,LOC107749276,LOC107686234 non-coding upstream 79328 24444502 ~ 24445199 (+)
G128856 NA non-coding upstream 81368 24442373 ~ 24443159 (+)
G128841 NA non-coding upstream 83995 24436038 ~ 24440532 (+)
G129038 NA non-coding downstream 139397 24664451 ~ 24728979 (+)
LOC122362653 NA non-coding downstream 142430 24667484 ~ 24669844 (+)
LOC122362654 NA non-coding downstream 210133 24735187 ~ 24737012 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 314008 24839062 ~ 24856231 (+)
G129127 NA non-coding downstream 475676 25000730 ~ 25000930 (+)
G128858 NA other upstream 66967 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 787679 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2085848 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2112570 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3883468 20634845 ~ 20641059 (+)
LOC122323037 NA other downstream 58791 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 769689 25294743 ~ 25309740 (+)
mt2 NA other downstream 821338 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1396213 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1427276 25952330 ~ 25962581 (+)

Expression


Co-expression Network