CI01000001_02286306_02287855 (HOXC5A)


Basic Information

Item Value
gene id CI01000001_02286306_02287855
gene name HOXC5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2286263 ~ 2288002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02286306_02287855.mRNA
ACGTCCTCTAGAAATACAAATAAAGTCCAATAAACAAATAAAACTTCTAAACAACTTATGTATACTTTATTAGCTGATTCAGTCTCTGCTGCGACCGGGTGCTTTTTGTGACTCTCTCCAAGGTTACTGTATTGTTTTGGAAACAGAATGAGCTCATACGTTGGAAATTCTTTTTCTAAGCAAACGCAAGACGCCTCCTCTTGTAGAATGCACACTTTTGGCAACTATGGAGCTCACTCTGAGTTCCACGAGTCCAATTACGCGTACGAAGGACTTGATCTCGGCGGATCCTTCAGTTCTCAAATCCCCTCCAACTCTTTGAAACGGGAGGCGATAAACACAACCGACCGTGCAAGGACCAGTGCAGCAGTTCAGCGAACACAGTCCTGTTCAGCTTTGGGCTCTCGTAGCTTTGTAAGCACTCACGGGTACAACCCCCTCAGTCACGGACTGTTGAGCCAAAAAGCCGAGGGGAATATGGAAGTTCTGGAGAAGCCCAGCGGCAAGAGCCGCACAGACGATATCAAAATGGAGACTACTTCAGCGATAAAGCAACAAACTAATTCGACTCAGCGTCAGAACCAGTCGCAGCCGCAGATATATCCGTGGATGACAAAGCTACACATGAGCCACGAATCTGACGGTAAAAGGTCACGAACCAGTTACACCCGGTACCAGACTCTGGAGTTGGAGAAAGAGTTCCATTTCAACCGATACCTCACACGTCGCAGACGTATCGAGATTGCCAATAACCTCTGCTTGAACGAGCGGCAAATTAAAATTTGGTTCCAGAACCGTCGCATGAAGTGGAAGAAGGACTCAAAGTTGAAAGTGAAAGGAGGACTATAAATAATGTGGTGCACGGCTTCAAATGAAACAACCTGAAAATAAA

Function

symbol description
hoxc5a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human HOXC5 (homeobox C5).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02286306_02287855.mRNA True 892 mRNA 0.46 2 2286263 2288002

Neighbor

gene id symbol gene type direction distance location
CI01000001_02274875_02276207 HOXC4, HOXC4A coding downstream 9494 2274292 ~ 2276769 (-)
CI01000001_02258523_02262621 NA coding downstream 23160 2258442 ~ 2263103 (-)
CI01000001_02236985_02242725 HOXC1A coding downstream 42270 2236582 ~ 2243993 (-)
CI01000001_02173311_02179118 NA coding downstream 105276 2172770 ~ 2180987 (-)
CI01000001_02159372_02162554 HNRNPA1, ROA1 coding downstream 123709 2159159 ~ 2162554 (-)
CI01000001_02289890_02291109 HOXC6.S, HOXC6, HOXC6BA, HOXC6AB, HOXC6A, HOXC6AA coding upstream 1088 2289090 ~ 2291744 (-)
CI01000001_02301569_02304543 HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S coding upstream 13133 2301135 ~ 2304572 (-)
CI01000001_02305032_02310500 HOXC9, HOXC9A, HOXC9AA, HOXC9AB coding upstream 17000 2305002 ~ 2311082 (-)
CI01000001_02318724_02321379 HOXC10A coding upstream 30722 2318724 ~ 2321379 (-)
CI01000001_02327669_02329891 HOXC11, HOXC11AA, HOXC11AB, HOXC11A coding upstream 39667 2327669 ~ 2329891 (-)
G14304 NA non-coding downstream 131380 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 134807 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 137326 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 142898 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 167697 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 79856 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 110153 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 115175 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 182193 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 336305 2624307 ~ 2624520 (-)
G14228 NA other downstream 229785 2055974 ~ 2056478 (-)
G14219 NA other downstream 291365 1994210 ~ 1994898 (-)
G14104 NA other downstream 518805 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1889130 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 2028746 238241 ~ 249437 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2104312 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2188282 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2281080 4725927 ~ 4728210 (-)
G15736 NA other upstream 2512899 4800901 ~ 4801395 (-)
G16332 NA other upstream 2662687 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021865 hoxc5a coding NC_007134.7 CM002907.2 36118738 ~ 36120511 (+)