CI01000001_02301569_02304543 (HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S)


Basic Information

Item Value
gene id CI01000001_02301569_02304543
gene name HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2301135 ~ 2304572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02301569_02304543.mRNA
AGACTGACTCTTTTTTATGCTAGATAAACATGAGCTCTTATTTTGTTAACCCTCTTTTTTCCAAGTACAAAGGCGGCGAAACATTAGAGCCAACTTACTACGACTGCAGGTTTCCACAGAGCGTTGCCCGAAGCCACACGCTCGTGTACGGACATGGAGCAGCTGCGCCGGGGTTTCAGCACCCGTCGCATCATGTACAGGACTTTTTCCATCACGGAACCACAGGTATCTCCAACCCTGGTTATCAACAGAACCCCTGTGCATTGGCATGTCACGGAGACGCTACGAAATTTTATGGATATGAAGCCCTTCCGAGGCAACCGCTTTATGGTACCCAGCAAGAGGCCAGTTTAGCGCAATACCCAGACTGTAAATCGTCCAATAGCACTAACCCCGGAGAAGGACAAGGCCACTTAAGTCAGAACTCCTCACCGAGCCTCATGTTCCCATGGATGCGGCCTCACGCTCCTGGGAGACGCAACGGAAGGCAGACATACAGCCGTTACCAGACTCTTGAGCTAGAGAAAGAGTTCCTCTTCAACCCATACCTCACACGCAAGCGCCGCATTGAAGTGTCCCACGCGCTGAGCTTAACTGAACGGCAGAGATTGCAATCGTTTGAAAATCTCGAAAGAAGCTACCTAATCATGGGAAATTTGCAATATACATTTCTACCTAGAGATTTCATAGACTCTTGTTTTGTAGTATTAAACCTAAGTTATGTAACTTACCCTTTTAATCACTTATTATGATTATCGAGCTTTTTGAAGTCTTTGGAAGACACTAATAGCTCGAAGCCAATCTTAACTATGTTAAAAGATTGTACCACGGCACTACCTAAAAACAAAGTTTTGCTTGCAAGAATGAATTATTAATTTATTCTACATGCTGCTTTGTTGAAATTATTTAGACATTTCCCCCAACAACTTAAACTGCCTATAGAAAATGCACATTTATGTGTAGATGAACAAACACGCTAATTACTACCCTACCTTATCTAAGGAAAGAGAGTCATTTATCGTGCTGGTGTTATAGCGTAGATTTTGAATTGCACTGAGTATAACCTTCATGTACGTCTTGTAATATCTTGCTGTTATCAATATGCTCGTTTTACTTGTGTTCCTCGTGTGAATATAGACAAATTCGTGTGTGTCTACGCCATTGTTGAAATCAACTGAAGAATAAA

Function

symbol description
hoxc8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic pectoral fin morphogenesis; endocrine pancreas development; and exocrine pancreas development. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; fin; mesoderm; nervous system; and somite. Orthologous to human HOXC8 (homeobox C8).
hoxc8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including anterior/posterior pattern specification; negative regulation of transcription by RNA polymerase II; and skeletal system morphogenesis. Located in microtubule cytoskeleton and nucleoplasm.

NR:

description
Hox protein, partial

GO:

id name namespace
GO:0048705 skeletal system morphogenesis biological_process

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02301569_02304543.mRNA True 1186 mRNA 0.42 3 2301135 2304572

Neighbor

gene id symbol gene type direction distance location
CI01000001_02289890_02291109 HOXC6.S, HOXC6, HOXC6BA, HOXC6AB, HOXC6A, HOXC6AA coding downstream 9391 2289090 ~ 2291744 (-)
CI01000001_02286306_02287855 HOXC5A coding downstream 13133 2286263 ~ 2288002 (-)
CI01000001_02274875_02276207 HOXC4, HOXC4A coding downstream 24366 2274292 ~ 2276769 (-)
CI01000001_02258523_02262621 NA coding downstream 38032 2258442 ~ 2263103 (-)
CI01000001_02236985_02242725 HOXC1A coding downstream 57142 2236582 ~ 2243993 (-)
CI01000001_02305032_02310500 HOXC9, HOXC9A, HOXC9AA, HOXC9AB coding upstream 430 2305002 ~ 2311082 (-)
CI01000001_02318724_02321379 HOXC10A coding upstream 14152 2318724 ~ 2321379 (-)
CI01000001_02327669_02329891 HOXC11, HOXC11AA, HOXC11AB, HOXC11A coding upstream 23097 2327669 ~ 2329891 (-)
CI01000001_02339253_02340813 HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12 coding upstream 34681 2339253 ~ 2340813 (-)
CI01000001_02343039_02351117 HOXC13, HOXC13BA, HOXC13A, HOXC13AA, HOXC13AB coding upstream 37670 2342242 ~ 2351117 (-)
G14304 NA non-coding downstream 146252 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 149679 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 152198 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 157770 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 182569 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 63286 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 93583 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 98605 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 165623 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 319735 2624307 ~ 2624520 (-)
G14228 NA other downstream 244657 2055974 ~ 2056478 (-)
G14219 NA other downstream 306237 1994210 ~ 1994898 (-)
G14104 NA other downstream 533677 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1904002 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2087742 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2171712 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2264510 4725927 ~ 4728210 (-)
G15736 NA other upstream 2496329 4800901 ~ 4801395 (-)
G16332 NA other upstream 2646117 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021863 hoxc8a coding NC_007134.7 CM002907.2 36101185 ~ 36103635 (+)