slc24a1 (LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763)


Basic Information

Item Value
gene id slc24a1
gene name LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25952330 ~ 25962581 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU191117
CTGCAGCCCAGCTGTGAGACAGCAGCGCTCCACGCACCGCCGCGAGCGTCGTCTTTCACCCGGTCTGTGAAAGGAAACCTGCACCACCGAGAAAATGAGATGAAACtgtctgagagtgtgtgctGCATACCCCTGCGTCTTTTGGGGGGAAATTCTGGATGTTCTGGGTGTCATTGCCCTAAAAAACAACTTGGTGCCCTTTAGGAAGCATACTAGAAAATGTTCCTGACTCGAAGAAAGAGACTTCAGCTTAGCCGGATAATATTACTTCTGTCTGGGGTTTTCCTTTGTTCTTTATATCAGCTCACTATTAGAGCAAGACTACCAGAACCCTGGTCTGAGCCCCAAATAGCAGGAAAACCTGAGGATGGCTCTGATCCTGGCTCTGGATGGTCAGATATGACAGTGCTTCCGACTAATTTGACCACTGCTGAGCCAAATAGCTCCAACCACACAGATAGCGTCCAGTCGTCAGAACCAGCAACAAATGTATCCATCCAAACTATCTCTAGAACAGAGACACCTACAACAACCACAAACAGTACAGTCAACCAATGCATCTTTGTGGATCCAGACCTTCCAAAACCCACCCCAGT
>XM_043264898.1
CGCTGAAGAGCTGTCCTGCGGTGCGTCCTGCTTGACCTAAGCAGCGCTCCCAGCATCCGTGCCTTTCCCTGCAGCCCAGCTGTGAGACAGCAGCGCTCCACGCACCGCCGCGAGCGTCGTCTTTCACCCGGTCTGTGAAAGGAAACCTGCACCACCGAGAAAATGAGATGAAACtgtctgagagtgtgtgctGCATACCCCTGCGTCTTTTGGGGGGAAATTCTGGATGTTCTGGGTGTCATTGCCCTAAAAAACAACTTGGTGCCCTTTAGGAAGCATACTAGAAAATGTTCCTGACTCGAAGAAAGAGACTTCAGCTTAGCCGGATAATATTACTTCTGTCTGGGGTTTTCCTTTGTTCTTTATATCAGCTCACTATTAGAGCAAGACTACCAGAACCCTGGTCTGAGCCCCAAATAGCAGGAAAACCTGAGGATGGCTCTGATCCTGGCTCTGGATGGTCAGATATGACAGTGCTTCCGACTAATTTGACCACTGCTGAGCCAAATAGCTCCAACCACACAGATAGCGTCCAGTCGTCAGAACCAGCAACAAATGTATCCATCCAAACTATCTCTAGAACAGAGACACCTACAACAACCACAAACAGTACAGTCAACCAATGCATCTTTGTGGATCCAGACCTTCCAAAACCCACCCCAGTTCCTACGGCAACCGACACGACAACTGTAGTGCCCAACACTACAGCGCCCAGACCTGGTGATGCACCACACATGAAGGGCGTACCGGAGGACATCTTCTCCATTGAGGATCGACGCAAAGGCTGGGTTGTTCTACACATCTTTGGAATGGTATACATGTTTGTTTCTTTGGCCATAGTCTGCGATGAGTTTTTCGTTCCTACGTTGGGAGTCATAACAGACAAACTGGAGATCTCAGATGATGTGGCAGGGGCGACGTTCATGGCTGCTGGAGGCTCTGCTCCCGAACTCTTCACTTCCTTGATCGGGGTCTTCATTTCTCATAGCAATGTGGGCATTGGAACTATCGTAGGCTCGGCTGTCTTCAACATCCTGTTTGTGATTGGAATGTGTGCGCTGTTCTCGGAGATGCTTCACCTCACCTGGTGGCCTCTTTTTCGGGATGTTTCTTTCTACATTCTCGATCTCATCATGCTCATCATCTTCTTCTTGGACAATACTATTATGTGGTGGGAGAGTATGATGCTGGTGGGCGGGTATGCCGTCTATGTTTTCTTCATGAAATACAATGTTCAGATTGAGCGGGCCTTTAAGTCTCAACTCAGGAAACACAAGAACATCGTCAAAGTTATTGCGGTCGAAGAACCTGAGAAGGACAATGGGACCTCAGGCGAAGAGAACAGGCCACCTGAACCAGAAGACAAGAATAGATTAAAGCTGAAGCCCACACTGCAGCGCGGGGGCAGTTCTGCCTCTCTGCACAACAGCACCATGAGGAACACCATCTTTCAGCTGATGATTCACACACTGGATCCTCTTGGAGAGGTGAAATTTAAAGACAAGGCTCAGATTTTGAACGACATGGCCCGGGGGAAAGTAGAgaacaaaaagaaggaaaaatctGGTGAAGGTGATGATCAGACGGAACAGTCCAAGGATTCCAAAGACTCAGCTCCAGGAGCCAAGGAGGAAGAGGCTAGTCAAAAGCCTGAGGCACAAAAGGAAGGAGACACTGCAGCAGGAGGAGGATCAGAAAAGCCAGGAGGTTCAGATGATTCAGGGGATGATGAAGATGACAGTGACGAAGACAGCGATGAAGACAgcgatgatgacgatgatgatgatgaggatgaaaaTGAGGATGAGGCTGGAGAGGAAGGAGAAAATGATGAACCTCTGTCATTAGAGTGGCCAGATACCAGACGCAAACAGGCCACATATTTGTTTCTGTTGCCCATTGTCTTTCCACTGTGGCTGACAGTTCCAGATGTCAGAAACCCTGCATCCAAGAAGTTCTTTGTCATCACTTTCCTTGGTTCAATAGTATGGATTGCTATATTCTCCTATCTTATGGTGTGGTGGGCACATCAGGTGGGTGAGACCATTGGCATTTCTGAGGAAATCATGGGTCTTACCATTCTGGCCGCAGGAACATCCATTCCTGATCTTATCACCAGCGTGATTGTGGCTCGAAAAGGCTTAGGAGACATGGCTGTCTCGAGCTCTGTAGGCAGCAACATATTTGACATCACCATGGGGCTGCCGGTGCCCTGGCTGATGTACTCATCTTTTCATTCACTGGCGCCGGTGCCCGTGAGCAGCAATGGGCTGTTCTGTGCCATTGTGCTGCTCTTCCTCATGCTCCTCTTTGTCATTATCTCCATCGCTGCCTGTAAGTGGAGGATGAATAAAGTGTTGGGATCCACTATGTTCATCCTCTACTTTGTGTTCCTGGTGCTCAGTGTCATGCTAGAGGATCGAATCATCATATGTCCTGTGTCCATCTGAGCAAACCTGTTGATACAGTCCTGGCATTTGAAACGCTCTGAACTGTAACTTCACACATATTAAAAGCATCTCTGGACTCGCTGTTGACTTATTCTGTATTTTGCAAGATCTTTTGTAAAGGGATGCAATAACTGGCCATCATTTCCAAACTATGTTAACTGTTACAGGCACTTTTTTGGTCACCACTTTTGGCTTGTTACATTAAAATGGCAGAAAAGAGTAACAGGCCCTGTCCCAAATGGTCACCATTTGTGTTATCCTCACTTTGGTGATGTAATGCCATATGGATTGTTGAGTGTAGACTGC

Function

NR:

description
PREDICTED: sodium/potassium/calcium exchanger 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191117 False 596 TUCP 0.48 2 25952398 25953772
XM_043264898.1 True 2756 mRNA 0.48 13 25952330 25962581

Neighbor

gene id symbol gene type direction distance location
hacd3 hacd3,LOC107672296,LOC107738726,LOC107583769,LOC107742880,LOC107596982 coding upstream 8382 25940729 ~ 25943948 (+)
arih1 arih1,LOC107742882,LOC107672283,LOC108423892,LOC107549652,LOC107686289 coding upstream 31355 25906919 ~ 25920975 (+)
LOC122322950 LOC107549654,LOC107576747,LOC107672203,LOC107742895,LOC107686352 coding upstream 49415 25897542 ~ 25902915 (+)
trnal-cag_32 NA coding upstream 54825 25897423 ~ 25897505 (+)
st3gal2 st3gal2,LOC107742884,LOC107672232,LOC107686287 coding upstream 76598 25854441 ~ 25875732 (+)
LOC122362626 LOC107672296,LOC107738726,LOC107742880,LOC107686290,LOC107596982,LOC107583769 coding downstream 228423 26191004 ~ 26196388 (+)
LOC122362692 LOC107719968,LOC107671151,LOC101886608 coding downstream 338335 26300916 ~ 26303177 (+)
LOC122323090 LOC107710382,LOC107686534,LOC107560047,LOC107719970,LOC107671152,LOC107599867 coding downstream 383431 26346012 ~ 26357471 (+)
G129370 NA non-coding upstream 275469 25676557 ~ 25676861 (+)
G129368 NA non-coding upstream 277020 25675071 ~ 25675310 (+)
G129360 NA non-coding upstream 288745 25662497 ~ 25663585 (+)
G129270 fam192a non-coding upstream 509889 25440048 ~ 25442441 (+)
G129262 NA non-coding upstream 603292 25348756 ~ 25349038 (+)
G129435 NA non-coding downstream 4435 25967016 ~ 26221023 (+)
G129438 arih1,LOC105007423,LOC107738728,LOC107686289 non-coding downstream 194326 26156907 ~ 26158502 (+)
G129427 NA non-coding downstream 197444 26160025 ~ 26160419 (+)
G129446 NA non-coding downstream 250349 26212930 ~ 26213344 (+)
G129455 NA non-coding downstream 369645 26332226 ~ 26335988 (+)
mt2 NA other upstream 603736 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 642590 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 1363993 24583845 ~ 24588337 (+)
G128858 NA other upstream 1494770 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 2215482 23457100 ~ 23736848 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 266513 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 341306 26303887 ~ 26306806 (+)

Expression


Co-expression Network