G129454 (frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825)


Basic Information

Item Value
gene id G129454
gene name frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 26229094 ~ 26332010 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU191154
cttttttttttttttttttttttttttGTTAAGTGTAATTAAAAGGcctttattttctcatttgtttcagTACAGAGCTGGTAACACACATGGTAAATCTGTAGAGCTATTTGGTTCCCTTGACGTCTTTACAAGGATTGCTGATGCTCATGTACTGTCCACTAGGGGGTTGTGGGAAGAGTCTGTGAGCAACGTTTTCTCAAAGTGTCCCATCAAGGGCTAAAGCATGCGATTGATCCACACTAGGCACGACAATACGGACatgaacacacgcacacacacgagAACACCGAAACAGGTACAAACATAGCCTGAGGGACGAGCCCTCACAGTCTCCCACCGACTAAAGAAAAGAAACCCATCACAAATagatacaaatagaaaaaagagCGTTTTACAACTCTAGATAAGCAGAATGAAAAGTGCAAGAgaagaatcaaatcaaaaagacaCAATGGCAGGCTTTTGATTCTTTTATCCCCAGAACTTTGCTACGTGATCACGCCCAAGCAGACATAAAGGCATCAGCTAGCATTCGGaaagaaactaaactaaagaGAACATCTCCGTTACGGGCTTTAGAGCGGTTTCTCGTTGACTTGTATGACACAAAACAGTCACAGAGAGTTACGAAGATAACCGAGCTGGTTTTATACATGGAGAGCAACTTAGAGACGGACTCCATCAGCAGTTTTCGGACTGCTCTCAAATGTCTTCGCTTGCAAGTAACGACTCCGTGGTTTACGATCAggaatgtttcaaataaatgttcattgtgCACGCTGCCGTAGAGGCAGAATGGCAGTGCTCGAGTAACTCACGACAAATGATTATTCCTTATTAAAGGGcctatgcattattattaaaatcgcACGCATTCGCACTCAAACCTCACGCCATGCTGATTGCTCGGATAAGCCGAATTCCTGCTCCGAATGATCTTCTGTCCCGTACTGAACTCTGGCTTGTgaactgttaataaaaatgaacgGTTTGAATTGCCCTTTGCCCAAAAATGCATGCGTGTACGTACATAGTGGAATGGCAACAACTAAGACCACATGTACAGTAGAAGTTCATCCAGACGTCCCTAGCACACTTTGTGTAAAATCAAGGCATTATAAAACCCAACATACACCGAAATCATCGTAAACTCAAAGAAAACCCCTCAAGACGACACATTGTTAACCGAAAGACTGACTATTTCAGGTTGAACTGCCAATAATGCTAAACTTAGCACATCTTAGGAAACAGTGTGGCCCCGTAGCTTCACAGACTGTGTGGAATGTGGAGGAGATTGATCAGCCTACGAAAGGAAGGAGACGTTTTGGGATCATCTTAAGTACATCTATATAGCTGAGCTCCAAAGATTTAGCTCAAGTCTTATGGCTTTATCTTAttcacactcgcacacacaaacTTACGATTTATTGGCTAGTTAAACGCTGTTCTCATGTAAAAGATtcttaaataaaagcttttttttttttagaaaacagtgGGGACTCCAAGTTTTCTAACGCGATTGATAGTATTGTGCTCCGGCAACTTTGTTGCCAAGGTAGAAATCGGTTGGTCCGAAAAAATCACGTAAGAATGACGTAAAGTCAGCTAAAATGGCAGTAAACGTGACTTCTCTCGTTGGCACTGACAGCgaaaaagatgaagaaaaaaaacccaaaaagataataaagtgtaattcttttaaatataatgattcTGAAACTTTACATCGTAGTTCCAACAGAGATACTCTGCTGATTACAGGATCCTACAAGATGGGAGGAGGGGGGGGATATCCACTTGGAGCCCCCCGCGGGAAGTTTTGACTTCCTGCGAACGGATTCTGACAAAGACGCATACAAACGTtactctgaaaaataaatagaaataactgattttaaataaataaataaatacatcattttgTTCCTTAACAATATTAGTAGACGGCAAGCATGCGGCTACGTTTTCATTCTATATTAGTTCACACGAAGCACTTAACATACAGTATTTGCTCATGATGTCCAGGCATGGATTGAATCTGAAAATGAAGATTAGTCTAGTATACTTCATATTCTCTCCAGTACCCActcacagaaaataaatacatatttgatttgattagaaaatatacacagtatttaACCCCCTccgttttgttattaaaatgacaaagaacACCTACTTAGgtacacaatatatttttttgcttcatcTCTGAAACATGCGCATCTTTTTGTACTGTAACATGCAGTATCATAAAGTAGGAACTATGCATATATAGGTCAAACTACACGCCTATGGGTTCGGGGAGGGGGGTGTTGCttgcgtttttttgtttttttttcctttcgtGAAAGTCCTTTGAAATAAGAGACGTATCCGTGTAAGAGATCGCACCGGAACAAATGACGGTAAcggcaaagaaagaaaaaaaaaagaaaaggtttcgATCGGATACTAGAGGGGAAAGAAAGCATGATGTCACGTAAACGACTGATAAGCGCTAAGCACACATTCGTTTGACCTTGCACTGTGAATGTAGATGGAAGTACCCGCTGTTTCTCAATCCAACCACAGAGTTATTGCAACTGAACGCGGCCCGTCAGAAGAGCAGCTTCCATTTATCCGGTGGGAACCTCGTTCGGCAAACCTCACTGAAGCGGCTTTTTTCATTCGTTCGTTCGAGTGGCGCAAAACGGCAATATTCAAAATGGAAAATTACGTTATGTACTTGTAtgtcaaaaaaaagacatttagaattttttttccctcatgtAATAAAAGGCAAAGGGGTCCGATCTTGTTTTGGAACCTAATGACTTTAACTCAACGGATGAAGCCAAAAACGGTCTATAATGCGATTTGCAGACTTTGAATATAAAGCATGAGCTGATGCGCTTTTATTGTGCAGTTTTcgaatttttttacaatgacaGACGTTTCATTAATGCCGACTCGGTGTGGGAGTAGAGTAACGCTCCAGTGATGAGATGAAAGCCGCTAAAGTGACGTTTCCTCACGAGAACGACTTGTTTTTATTGGGTTACGGCATGTACACAACAAAGTCTCCCTCAGATCCATTCTTGGCTCTCTACATGTCGTTTTTGGCCTGGATGAAAAGTCTCTACTCAATAAATAACGCTCCAACAATCTTGATCCAACTCAGGCTTGCAATTTCGCTTCATTTCCCAACTACTTCATAACCGAACGCATATCAGTAGGTATCATCTTTGCCAAAAGAGTTTCTCCGGGAAATATGAGGATAAAACGCGCAAAGATTTAGCTCTGCGTCGGTCTTAAGCGAAACGATATTCTGAGACTCACATCCTCACACAATGACTCGTACGGTAAGCCCTAAAGCAGCTTTCAAATGACACAGGCTccctttttaaacaaatgcgaACTCTGACAAGTCGTCTCAAGAATGCGCCGTCACAAAAGCGTGTACCGAGATCGACAGAGCAATATGTACAGGATGCAGTTCCAGTAGTGCAAATAAGTTCAGCAGTTTGGTAAGATGTGCAGTTAAATACACACGTAACAGTGCCTTCAATCAGCTCTTCTCGTGAAACAATAACATGAAAACCGAAAGCGAAGGAATAGTTCGCTCATGTTTTTCGAAACCCGTATGAAATTCCCTCTTTCTTCCGTAGAAGACAAAAGGAGAAATTTCGAAGAATGTTCACACTGCTCTCTCCTGAGATTTTtggaaaatactgtattttttaagcTTAGTCAGCATTCACCTCCATAGTATGGAAGAGACGACACATGACCAAGTCGTacgtattttatgaggtggctaaaTCGTACAAATTCGTACGACCCCacttgtatgattttttttttttttNCGCAACCCAACTCGTCAAATATAAACGATTTGGCAAAAGGTCGCACGAATTAGCCGGGGCTGGAAGAGAGCGGCATGAACATTCTTTTGAACTCCTCCTTTTGTTTTCCGCCGCCGTAAGAAAGAAaagtgagcaaatgatgacttcatttttgttttttcgcgaactattcctttaaggagaGGATTCAGAACATCAAAAACTGCAGGTAACAGTAACGAAGCATTGACTGGAACAAAAACACACCTTCATTTAAAGTGCTCAGGCAGAATACGTTTTACCACAAGAAATCAAAGCAAAGAAACAAATACGCCGATGCTAACAGGAAGACGTCCCTGGCAGCTACGAATTGCTTATTTCACGATGTTTCAAGGCTTGTCTCCTTTTTGTCAGGGTTTGTTAGGATGTCGGGCAGTGGAAGAAGCCAGCCGACCGGCTGGAACTGAAGAATGGAAGAAGAGGTTGTTTTGCAGGCAGTGTATTCGACACCTGAAAGATTCCTTCTGTCTGGGCAGGAGCATCTAGTCCAACTATCTCTCCCGTTCCCACTTTTTTTGattaacttatttaattattcacaatGACAAACAATTCTTCACTGTCCTTTCAGACTCGACAAAAGCAACAGAACTGATTTCATCTAGATGACCAGAGAATCTAGAAGGAATGTGTTAAATTAGGCAGTGGAAGAGGCAGTGTTTTTTTATCCCTGGTCCCCGATGGAAAACTTTGGAATGctgtttatgatatttttagTCGTGAATGTGAGCTTACATCTCTTCTGTGAACGGACCCCAAGGATATACACCCCTACGAGCTCGGCCTGAACATCTGCGGGAAGAGTCTCTCTCATTAGACGCTTTCTCGTTGGAGCTGGTCTTCTTTAATACCTCTAGTCTGGCGGCCCATGGCTGTAATTCAGTGCTGATTGGGTAAGATGACGTGTTGTGCATGTCGAAAAGTGAAGGAAATGAAAGGGGGAgggaaaggagagagagagagagggagggaaggaAGAAGAGCAGGATTACTTCTTGGCAGTGAGGGCTGCTAACGTGGCATCCACCTCCTCCTCGGGTTTGAGAGGATGCCACTGAGCGATGGGCCTGCGTGGGTTCGCCAGCATGTCGGACCAGTGCCGGAGCTCGGTGCCCTGCGCTTTGCTGCCCACCCAGATCTTCCCGATGGCGTCGTTCTTGCCGATCTTATCGTAGTCGAGCACCGTGATCACAGCTTGTATTTtctgggagga
>TU191155
TTACCAACGCAGTGACTACGACAAGTCCCCGATCAAACCGCGCATGTGGGTGAAAGCTCATTAGAGCGAACCCTACGAACGGGTGAAGAAACGCTCCTCACACTCCGGTAGTCACAGGCGGTTCCCCAGCACAGGCAGCTGTGAGGCAGGAGGGAGCAACTCTCTCCAGAACAGTCCTGTGCGCTCCCTCCTCACTGGAACAGCCAGTCCAGCATGCCCTCCACCCCTGACCTGAGAACACGGAGCTACGTGCACTCAGCCAGTCTAACTCAGCCATTCCGTGGCCGAAGTTCCAGTTTGGAGTCTCAGGGGAAGCTGCTATCTTTGGAGGCAGACACAGAGGTGGGACTTAGCCCTGACCTGTTTCTGTCAGGACCACAGAGGACAGGAAGCAATGGCTCTGTTGTCCCCGACGACTGCTCATCTTGCACCAGCCACTCCAGTTCAGAACATTACTACCCCTCATCCACCTCCAACCCTAACTACTGTACGCTGGCCGAGGACTCGCCCTCCAAAGCCCGGCAGCGGCAACGACAGCGCCACAAGTCTGCCGGACACCTGGGCGCATCCAGTTCTGGCAGCATGCCTAACCTTGCGGCACGCAACGGGAGCACCCACGGAGGGGTGTGCGGTAGCCACCAGGGTGTGTACCTCCACAGCCAGAGCCAACCCTCCTCGCAGTATCGCATCAAAGAATACCCGCTGTACACAGAGGGCAGCAGCCCCAGCGCCGTGGTCGTCCGCAGCCTGGAGAATGACCAAGAGGGGCACTACAGCGTCAAGGCGCAGTTCAAGACCTCCAACTCATACACAGCCG
>TU191156
cttttttttttttttttttttttttttTTAAGTGTAATTAAAAGGcctttattttctcatttgtttcagTACAGAGCTGGTAACACACATGGTAAATCTGTAGAGCTATTTGGTTCCCTTGACGTCTTTACAAGGATTGCTGATGCTCATGTACTGTCCACTAGGGGGTTGTGGGAAGAGTCTGTGAGCAACGTTTTCTCAAAGTGTCCCATCAAGGGCTAAAGCATGCGATTGATCCACACTAGGCACGACAATACGGACatgaacacacgcacacacacgagAACACCGAAACAGGTACAAACATAGCCTGAGGGACGAACCCTACGAACGGGTGAAGAAACGCTCCTCACACTCCGGTAGTCACAGGCGGTTCCCCAGCACAGGCAGCTGTGAGGCAGGAGGGAGCAACTCTCTCCAGAACAGTCCTGTGCGCTCCCTCCTCACTGGAACAGCCAGTCCAGCATGCCCTCCACCCCTGACCTGAGAACACGGAGCTACGTGCACTCAGCCAGTCTAACTCAGCCATTCCGTGGCCGAAGTTCCAGTTTGGAGTCTCAGGGGAAGCTGCTATCTTTGGAGGCAGACACAGAGGTGGGACTTAGCCCTGACCTGTTTCTGTCAGGACCACAGAGGACAGGAAGCAATGGCTCTGTTGTCCCCGACGACTGCTCATCTTGCACCAGCCACTCCAGTTCAGAACATTACTACCCCTCATCCACCTCCAACCCTAACTACTGTACGCTGGCCGAGGACTCGCCCTCCAAAGCCCGGCAGCGGCAACGACAGCGCCACAAGTCTGCCGGACACCTGGGCGCATCCAGTTCTGGCAGCATGCCTAACCTTGCGGCACGCAACGGGAGCACCCACGGAGGGGTGTGCGGTAGCCACCAGGGTGTGTACCTCCACAGCCAGAGCCAACCCTCCTCGCAGTATCGCATCAAAGAATACCCGCTGTACACAGAGGGCAGCAGCCCCAGCGCCGTGGTCGTCCGCAGCCTGGAGAATGACCAAGAGGGGCACTACAGCGTCAAGGCGCAGTTCAAGACCTCCAACTCATACACAGCCG
>TU191157
TGTCATATTTACTCATGTCATTACAAAGCAGCATGGCGTTCTTTCTTCTctggaaaacaacagaaaatatttagagAAATGTCTTTCCTCTTCTGTgttccagagaaaaaaaaaagcaggtatTTACTTTCCTACAGAATAAAGTGGTAGCCAGATCTAGATGGTTTCTAGCTGGTTTAGGTGATAGACTAGCAGCTAGTGGAGCTGAGGTCAGACATCGTAATCGACTTGGTTAGAGAAGTGTTCGAAAACATAACTTGAACTAGTTAACTGGCTTTACCGCCTGAAGTTGGTCCTCCAATCACATTGTAAGAACGGTGTCGGTTTCTCCCACAGCAACCAATCAATCGATGGCTTCTCAATGTCAGCGCTTTCTAAACTCTAAATGTTTCAGGATCTGTGTAGACGATGTTAGAATCcctgctgaaaacacacacacacacacacacacacagagacagaattaaTGTCCGTGCTGGTCCAGACTGGTTTAGGGCTCCTAAAAATTAAGGTTCTTCATtgacaaatgaaaaaatgccagcactttctatgaagcctgtatttacattacaaaggtattcttaaggcattataatgaatgtatttaaaaaaaaaaaaaacgtacagaGTATtaacatctcatgaataatcctaaaaacaattacattataatatgtatgtttgtgatTATAACAAGTTTGATTACATACTATGAGCACCATATTAAATCTGCTTCGTTTAATGAATGGACTATCGTATCTTGACCTTGGGCTAATGTGAGCTAGCTAATACTTTCATAGTATAAAAATTGGTGTTTTTCTAGTTGAAAGAATATTAGTAGACTTAGCAAAGCATCCTATACTTATTGTGTTGGTATGCATTCGTTATAATGCCTCAAGAATGCCCCtacaatgtattataaatacaaaggCTTCGTAGAAAGTGTTCTTAAGTAGTTCTTCGATGGGGAAACCCCCTTTTTGGAACCAGGCTGCCATTAGTCTCCCTTCATAACCATTTTCGACCAGCAAAAACTAGTTTGTGAGGTTTCTGCTTGTTAAGAAGCCTCGTGGGAACACCGGTAATAAGCAGCCAAACCACGGCTCTGGTGTTTTCAGCAGGGAAAAGCCCAACAAACTGCCATTCCTTCAAACGCTCAGCTGGTCCAGTAAGACCTTCAGAAGCTCTGCCAGAACCTTCTCCTCATGTCCGCCCCGTTTGTCCCCTTTACTTCTACATCTGTAGTGTTTATATATGACCTGATTGGCCGAACCAGTcgaatgtgttttatatttatttgtgcctTTCGTTTGTAATTAAGAGCATCTATATGGATAAAACAGAAGCACGTCACACACATGCCATTTcagatgctttgttttttttattgtccacGGTTTTTAACCTGTAATCTTGAACCAATGCTCAAAGCACTTTGTTTATGGTGGTTTGCCCGagtattaaaaacacactgaaaaatacaaaaaaagtgcagcGCTGCCCTCTGCCTGCCTGTATGATCATTACACCGTTACACATGTAaggaaaatgttatgtttgtgcattaaatacatttaatatatatgtagatatatactgtatgagtatttatgtaataaaaatgtgtgtgtgttgatgtagACTTATATACACGGTAAGTTCACTATTGTTACACTTAAAATACAGCACAACAGGCCAGTTTAGTCCCTAGAAATAGTTGTACACTAAAGTTTTTGAAGATCCTCTAAGCAGCAAATTCGGTGTTAAATACGACACATCAGCCAGAGTTAAGTGTAATTAAAAGGcctttattttctcatttgtttcagTACAGAGCTGGTAACACACATGGTAAATCTGTAGAGCTATTTGGTTCCCTTGACGTCTTTACAAGGATTGCTGATGCTCATGTACTGTCCACTAGGGGGTTGTGGGAAGAGTCTGTGAGCAACGTTTTCTCAAAGTGTCCCATCAAGGGCTAAAGCATGCGATTGATCCACACTAGGCACGACAATACGGACatgaacacacgcacacacacgagAACACCGAAACAGGTACAAACATAGCCTGAGGGACGAGCCCTCACAGTCTCCCACCGACTAAAGAAAAGAAACCCATCACAAATagatacaaatagaaaaaagagCGTTTTACAACTCTAGATAAGCAGAATGAAAAGTGCAAGAgaagaatcaaatcaaaaagacaCAATGGCAGGCTTTTGATTCTTTTATCCCCAGAACTTTGCTACGTGATCACGCCCAAGCAGACATAAAGGCATCAGCTAGCATTCGGaaagaaactaaactaaagaGAACATCTCCGTTACGGGCTTTAGAGCGGTTTCTCGTTGACTTGTATGACACAAAACAGTCACAGAGAaccaaagacacacacacacacacagaaagcttGACTGGACACCACCAGTGACCCTGGTCATATTCTCTCTCTATTACTGCTGACCCTTCACTGATTCCCAGACAGCTGCCTGCCCACACACACTTATTATCCCCTTCTGAACACACAAGACGCATCGCATTCCTCTGCAGAGATGCAGGAAGCTTCCATGATGCCTCATAGTTTCAGTGTGAGAACACACATTCA

Function

symbol description
frmd4a Predicted to act upstream of or within transmembrane transport. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction and bicellular tight junction.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191154 True 5112 lncRNA 0.42 2 26229094 26284050
TU191155 False 817 TUCP 0.59 3 26330472 26332010
TU191156 False 1069 TUCP 0.54 5 26229094 26332010
TU191157 False 2610 lncRNA 0.40 3 26276902 26326567

Neighbor

gene id symbol gene type direction distance location
LOC122362626 LOC107672296,LOC107738726,LOC107742880,LOC107686290,LOC107596982,LOC107583769 coding upstream 32706 26191004 ~ 26196388 (+)
hacd3 hacd3,LOC107672296,LOC107738726,LOC107583769,LOC107742880,LOC107596982 coding upstream 285146 25940729 ~ 25943948 (+)
arih1 arih1,LOC107742882,LOC107672283,LOC108423892,LOC107549652,LOC107686289 coding upstream 308119 25906919 ~ 25920975 (+)
LOC122322950 LOC107549654,LOC107576747,LOC107672203,LOC107742895,LOC107686352 coding upstream 326179 25897542 ~ 25902915 (+)
trnal-cag_32 NA coding upstream 331589 25897423 ~ 25897505 (+)
LOC122323090 LOC107710382,LOC107686534,LOC107560047,LOC107719970,LOC107671152,LOC107599867 coding downstream 14002 26346012 ~ 26357471 (+)
G129435 NA non-coding upstream 8071 25967016 ~ 26221023 (+)
G129446 NA non-coding upstream 15750 26212930 ~ 26213344 (+)
G129427 NA non-coding upstream 68675 26160025 ~ 26160419 (+)
G129438 arih1,LOC105007423,LOC107738728,LOC107686289 non-coding upstream 70592 26156907 ~ 26158502 (+)
G129370 NA non-coding upstream 552233 25676557 ~ 25676861 (+)
G129455 NA non-coding downstream 216 26332226 ~ 26335988 (+)
G129491 chkb,LOC107686538,LOC107710386,LOC107559534,LOC107719962,LOC107577700 non-coding downstream 47693 26379703 ~ 26380285 (+)
LOC122323030 LOC107719968,LOC107671151,LOC101886608,LOC108264446 non-coding downstream 75779 26407789 ~ 26408862 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other upstream 54938 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other upstream 266513 25952330 ~ 25962581 (+)
mt2 NA other upstream 880500 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 919354 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 1640757 24583845 ~ 24588337 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022127 NA non-coding NC_007134.7 CM002907.2 6313582 ~ 6324914 (-)