CI01000001_02318724_02321379 (HOXC10A)


Basic Information

Item Value
gene id CI01000001_02318724_02321379
gene name HOXC10A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2318724 ~ 2321379 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02318724_02321379.mRNA
ATGTCATGCCCGAACAACGTGGCAGCCAACAACACATTCCTGATGGACTCGCTGGTGGGAGGAACATCTCCGTACAGAGGTGAGAGCTATTCAACTAACTCTGGAATGTATATGCAAGCGTCTGCAGAATATGGTTGCTCCATGATGGGTAGTTTTGGTATTGTTGGTACCCCTCTCTCCAAACGGGATGATCTGCAGCCGAGTGGGATGCATCTCAGCAGTTACCAGCACTCACATTACCTGTCGCAGCGGGACGCTTGGATGGCAGGCTCTAAAACTTACAGAGGCTCCCAACCTGTTGCCCAGCCTTTGCACCCATGTTCGTTTCCAGCCAGCCATGTGAAAGAGGAAGCGATTCCGTGTCTTTACCAGCCTGATATCGACAGCGCTAAGGAGTCCGCTGAGAAATCCACCTACATCCGTTTGGGAGACAATAACAGCCACCCGAATCAAAGCGCCGTCTCCACCCCCGATTATTTCCGACGGAGCCAGGTGTACGCTAGTGAAAGGGGCCACCATGGAGATGAGTTCGGCTCGGACTTTAACCCAGTATCCAGAATATCCACGCCTGTTAAGGGACTAGCGGCAGATTCATATGTCAAAAGCAGCAAAGCAAGGCAGGACCCAGAAGACAAGGGAGGGAATACGCAGGAAGACGACTTGGATCAGGGACAGGCTAGAAAAGAAGAGAGTGTCGCAAAAACAGACAGTTGTACTGATGATTCCGAAAGCGAATTGAAAGATGAGGCTAAATTGGAAAAAACAACGGGGAATTGGCTAAAAGCGAAAAGTGGACGAAAGAAGAGATGTCCTTACACAAAGCATCAGACACTTGAGCTGGAGAAGGAGTTCTTGTTCAACATGTACTTGACTCGAGAGCGCCGTCTGGAGATCAGCAAGAGTATCAACCTCACAGACAGACAGGTCAAGATCTGGTTCCAAAACAGAAGGATGAAGCTAAAGAAGCTCAACAGAGAAAGTCGCGTCCGAGAGCTAACAGGCTATAGCTTCAACTGA

Function

symbol description
hoxc10a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; margin; mesoderm; neuroectoderm; and tail bud. Orthologous to human HOXC10 (homeobox C10).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K17444 HOXC10; homrobox protein Hox-C10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02318724_02321379.mRNA True 1017 mRNA 0.50 2 2318724 2321379

Neighbor

gene id symbol gene type direction distance location
CI01000001_02305032_02310500 HOXC9, HOXC9A, HOXC9AA, HOXC9AB coding downstream 7642 2305002 ~ 2311082 (-)
CI01000001_02301569_02304543 HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S coding downstream 14152 2301135 ~ 2304572 (-)
CI01000001_02289890_02291109 HOXC6.S, HOXC6, HOXC6BA, HOXC6AB, HOXC6A, HOXC6AA coding downstream 26980 2289090 ~ 2291744 (-)
CI01000001_02286306_02287855 HOXC5A coding downstream 30722 2286263 ~ 2288002 (-)
CI01000001_02274875_02276207 HOXC4, HOXC4A coding downstream 41955 2274292 ~ 2276769 (-)
CI01000001_02327669_02329891 HOXC11, HOXC11AA, HOXC11AB, HOXC11A coding upstream 6290 2327669 ~ 2329891 (-)
CI01000001_02339253_02340813 HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12 coding upstream 17874 2339253 ~ 2340813 (-)
CI01000001_02343039_02351117 HOXC13, HOXC13BA, HOXC13A, HOXC13AA, HOXC13AB coding upstream 20863 2342242 ~ 2351117 (-)
CI01000001_02416674_02429967 RARG coding upstream 94471 2415850 ~ 2430607 (-)
CI01000001_02510977_02523145 GDAP1L1 coding upstream 189455 2510834 ~ 2523145 (-)
G14304 NA non-coding downstream 163841 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 167268 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 169787 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 175359 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 200158 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 46479 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 76776 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 81798 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 148816 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 302928 2624307 ~ 2624520 (-)
CI01000001_02258523_02262621 NA other downstream 21512 2258442 ~ 2263103 (-)
G14228 NA other downstream 262246 2055974 ~ 2056478 (-)
G14219 NA other downstream 323826 1994210 ~ 1994898 (-)
G14104 NA other downstream 551266 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1921591 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2070935 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2154905 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2247703 4725927 ~ 4728210 (-)
G15736 NA other upstream 2479522 4800901 ~ 4801395 (-)
G16332 NA other upstream 2629310 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021856 hoxc10a coding NC_007134.7 CM002907.2 35969228 ~ 36086895 (+)