CI01000001_02327669_02329891 (HOXC11, HOXC11AA, HOXC11AB, HOXC11A)


Basic Information

Item Value
gene id CI01000001_02327669_02329891
gene name HOXC11, HOXC11AA, HOXC11AB, HOXC11A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2327669 ~ 2329891 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02327669_02329891.mRNA
ATGTTTAACTCTGTTAATCTGGGCAACTTCTGCTCCCAGACGCGTAAAGACCGGACATCCGAGTTTGGGGACAGGACGGGCTGTGCCTCCAACATCTACCTCCCCAGCTGCACCTACTACGTTCCAGAATTTTCCGCCGTCTCTTCGTTCCTTCCACAGGGGCCCTCGCGACAAATCACATACCCCTATTCCACAAATCTATCTCAAGTGCAACCAGTGCGAGATGTTTCCTATGGTCTGGACCCGTCCAGCAAATGGCACCACAGAACCAACTATGCATCTTGCTACTCAGGAGAAGACCTGGTGCACAGAGACTGTCTTCCGCCATCCACCATGACAGAAATGCTCATGAAAAACGAGAGTGTGTACAGCCACCACCACCACCACCAGCATCATCCGAACTCTAGCCACCCTTCTACCGGTTTCTACGCCGGCGTGGGGAAAAACAACGTGCTCCCTCAAGGTTTTGACCGCTTTTTTGAAACCGCTTATTGTAGCACGGACAATCAGTCAGAACATTGTTTACAAAAGAGCGAGATGAACAAATTAGAGACTTCTTCCCAACAACCCACAGCTGTTTCCGCAGCGCAGGAGCCGGAAAAGGACCCAGAGGATGAGGAGGAACATACCAATTCGGGCTCGTGCACTTCAGCAGCTACTAAGGACGGGAACGCAAGCAAGAGCAGCCATTCGAGTAGGTACCGAAGCTGTAAATGGGGAAAGGTTAAGGGACTAGCCCGGTGTTTTGTCGGTACCCCGCGCACAAGAAAGAAGAGATGTCCATACTCCAAGTTTCAGATTCGTGAACTGGAGCGAGAATTTTTCTTTAACGTTTACATCAACAAGGAGAAAAGGTTGCAGCTGTCCAGAATGTTAAACCTTACTGACAGACAAGTCAAAATATGGTTTCAAAATCGTAGAATGAAAGAAAAGAAATTAAGCAGAGATCGGCTGCAGTATTTCTCTGGGAATCCGTTGCTGTAA

Function

symbol description
hoxc11a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in neural tube; tail bud; and ventral mesenchyme. Orthologous to human HOXC11 (homeobox C11).
hoxc11 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.

NR:

description
homeobox protein HoxC11bb

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02327669_02329891.mRNA True 984 mRNA 0.49 2 2327669 2329891

Neighbor

gene id symbol gene type direction distance location
CI01000001_02318724_02321379 HOXC10A coding downstream 6290 2318724 ~ 2321379 (-)
CI01000001_02305032_02310500 HOXC9, HOXC9A, HOXC9AA, HOXC9AB coding downstream 16587 2305002 ~ 2311082 (-)
CI01000001_02301569_02304543 HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S coding downstream 23097 2301135 ~ 2304572 (-)
CI01000001_02289890_02291109 HOXC6.S, HOXC6, HOXC6BA, HOXC6AB, HOXC6A, HOXC6AA coding downstream 35925 2289090 ~ 2291744 (-)
CI01000001_02286306_02287855 HOXC5A coding downstream 39667 2286263 ~ 2288002 (-)
CI01000001_02339253_02340813 HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12 coding upstream 9362 2339253 ~ 2340813 (-)
CI01000001_02343039_02351117 HOXC13, HOXC13BA, HOXC13A, HOXC13AA, HOXC13AB coding upstream 12351 2342242 ~ 2351117 (-)
CI01000001_02416674_02429967 RARG coding upstream 85959 2415850 ~ 2430607 (-)
CI01000001_02510977_02523145 GDAP1L1 coding upstream 180943 2510834 ~ 2523145 (-)
CI01000001_02547325_02557711 TUBA1C, TUBA1B, TUBA1A, TUBA1D coding upstream 217304 2547195 ~ 2557725 (-)
G14304 NA non-coding downstream 172786 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 176213 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 178732 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 184304 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 209103 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 37967 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 68264 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 73286 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 140304 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 294416 2624307 ~ 2624520 (-)
CI01000001_02258523_02262621 NA other downstream 30457 2258442 ~ 2263103 (-)
G14228 NA other downstream 271191 2055974 ~ 2056478 (-)
G14219 NA other downstream 332771 1994210 ~ 1994898 (-)
G14104 NA other downstream 560211 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1930536 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2062423 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2146393 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2239191 4725927 ~ 4728210 (-)
G15736 NA other upstream 2471010 4800901 ~ 4801395 (-)
G16332 NA other upstream 2620798 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location