CI01000001_02339253_02340813 (HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12)


Basic Information

Item Value
gene id CI01000001_02339253_02340813
gene name HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2339253 ~ 2340813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02339253_02340813.mRNA
ATGGGCGAGCATAATCTTCTTAATCCTGGGTTTGTGGGACCTTTGGTAAACATCCACACTGGAGACAGGTTTTACTTCCCGAATTTTAGAGCCTCAGGGGGACAGCTGGCGGGGCTACCGTCTCTCTCGTACCCTAGAAGGGACAATGTTTGCTCTCTCCCGTGGAATCCATCGGAGTCGTGCAATGGATATCCTCAGTCTTACTTTAGCAGTCCCGTATCCATTAACCCCTCTTTTAATCGATCTTGTGAAATAACCCGACTGGAGGAAAGCAAGTGTTATTATGGCAATTCCAGCAGCACCAGAGAGTCGTGTTCAGACAGCAACAATCTCAAACGAGAGGAGCGAGCAAGAGATACATCAGTATCGTCTGATCACGGGATGCACAATGGGATGGGCAACAGTGGCACCTTCTCAAAGTATGATTATGGCACCGAACATCTGACCCAAGACCCGCCATCCTGTCAGTCGTTGGAGTCCGACTCCAGTTCTTCAGTGCTAAACGATGGAGGAAAGACTTCAGCAAGCGATCCACAAACCCTGGTATCGCAAGGAAACCACGCAAGCAATATCGCCAGTGGAGGAGGTGCCCCGTGGTACCCGATGCACACCCGGACCCGCAAGAAGCGAAAGCCCTATTCCAAACTGCAGCTGGCCGAGCTTGAAGGAGAGTTCATGCTGAACGAGTTCATCACCCGGCAGCGACGTAGGGAGCTGTCTGACAGGCTCAATCTCAGCGACCAACAGGTTAAAATTTGGTTTCAAAATCGGCGGATGAAGAAAAAGAGACTGTTACTAAGGGAGCAGGCGCTGTCCTTCTTCTAA

Function

symbol description
hoxc12a Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HOXC12 (homeobox C12).
hoxc12 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.

NR:

description
homeodomain protein, partial

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K09297 HOX_12; homeobox protein HoxC/D12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02339253_02340813.mRNA True 825 mRNA 0.51 2 2339253 2340813

Neighbor

gene id symbol gene type direction distance location
CI01000001_02327669_02329891 HOXC11, HOXC11AA, HOXC11AB, HOXC11A coding downstream 9362 2327669 ~ 2329891 (-)
CI01000001_02318724_02321379 HOXC10A coding downstream 17874 2318724 ~ 2321379 (-)
CI01000001_02305032_02310500 HOXC9, HOXC9A, HOXC9AA, HOXC9AB coding downstream 28171 2305002 ~ 2311082 (-)
CI01000001_02301569_02304543 HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S coding downstream 34681 2301135 ~ 2304572 (-)
CI01000001_02289890_02291109 HOXC6.S, HOXC6, HOXC6BA, HOXC6AB, HOXC6A, HOXC6AA coding downstream 47509 2289090 ~ 2291744 (-)
CI01000001_02343039_02351117 HOXC13, HOXC13BA, HOXC13A, HOXC13AA, HOXC13AB coding upstream 1429 2342242 ~ 2351117 (-)
CI01000001_02416674_02429967 RARG coding upstream 75037 2415850 ~ 2430607 (-)
CI01000001_02510977_02523145 GDAP1L1 coding upstream 170021 2510834 ~ 2523145 (-)
CI01000001_02547325_02557711 TUBA1C, TUBA1B, TUBA1A, TUBA1D coding upstream 206382 2547195 ~ 2557725 (-)
CI01000001_02570315_02577096 PMELB coding upstream 229176 2569989 ~ 2577122 (-)
G14304 NA non-coding downstream 184370 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 187797 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 190316 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 195888 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 220687 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 27045 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 57342 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 62364 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 129382 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 283494 2624307 ~ 2624520 (-)
CI01000001_02258523_02262621 NA other downstream 42041 2258442 ~ 2263103 (-)
G14228 NA other downstream 282775 2055974 ~ 2056478 (-)
G14219 NA other downstream 344355 1994210 ~ 1994898 (-)
G14104 NA other downstream 571795 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1942120 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2051501 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2135471 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2228269 4725927 ~ 4728210 (-)
G15736 NA other upstream 2460088 4800901 ~ 4801395 (-)
G16332 NA other upstream 2609876 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021858 hoxc12a coding NC_007134.7 CM002907.2 36063599 ~ 36065182 (+)
bowfin (Amia calva) AMCG00008803 NA coding CM030126.1 CM030126.1 12358727 ~ 12359365 (+)