LOC122322915 (LOC107553937,LOC107749305,LOC107686321,LOC107686322,LOC107553936)


Basic Information

Item Value
gene id LOC122322915
gene name LOC107553937,LOC107749305,LOC107686321,LOC107686322,LOC107553936
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24493933 ~ 24502864 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216514.1
AGCGCTTGTCTGTTTTACAGATgattaatcaaatgtttttgctgttctGCAAACATCACTATGGAGGAGCAACAGAAACATGAACTGAGGCCGTCTTGGGATGTGTGCAGAGAAGTGCCATACATTCAAAATGAGCAGATGCCAAAAAAACGAGTGCAGTGTTTGAAATGGTTCTCGTGTGCCATTGTTGGCATGCTTGTCTTCGTCCTTGCACTTCTCAGTAAAacatcatttcttcttttaataACATTTGGGAACAATGAAACTAAGATTATATGTTCAGAACAAAAACCAACTGCCCTACTTGGGATTGGCTTTGTTCTGGTCGGGCCAAGTGTTCTCCTTCTGCTTAAGAGCACATGGaagttcattttcaaaagtgCAACCATGCCCTcgaaaaaaactcttttttggGTTCTGTGTGTTGAGTTCTTGGTAGCACTGGGAGCAGCAGTTCTAACAATAGTAGCTATGCCACACTTTGACATTGTCACAAATGTGATGATCCTAAATAGCGTGAGCATCCTGTCTGCAGTGTTTCAGGTGGTAGCAGAGTGTcttgcaaaagaaagaaagcggcTTATAATGCTCCCTGTattatccatttttttaatagtgacAGGTTACGTGCTCTTTGCAATCAATTATTTGCTATTTGAAAGTTCCTTAGAGATAAATATATCAGTTGGCCTCGCCATCGTTGGGACCATCTTTGTTTCTGTGAACTGGTGGGAGAACTACAGCACGCTCTTTGCTGTACCGTTTCTAGAGGATATTTCCAGAGACGTCACTCAGTCTCGTAACGTGGTCTGCATCATCTCCAGTTTGATGAGAATCCTGGTTACATCAGCTGTGGTTGGAGCTTATGTTCCTCTCTCAGGTCAAGAATGGAAATCAGTCAAACTAATTTTCCAAACAGTCTctgtttgtcttgtttctttGGTGGCAATCCAGATTGCTTCCTCTGCCTTGTGCCGCTGGTTTGTGGTTGTGGCTTGTAAGATGCATGCCCTGCGCCGCAGCTTCGTTCTGCCCATGTACCTGGCCTCGATCACAGTTTTGGCAGTTTTTTTAGCTCCAATTGCAGTCGGACTCCcagattcaaataaaaattctacCTGTTTTGAGACCTTTCAGCCAGAATCCAGTGACACATGGTTGCATTTGTTGCTGACTGATGCTACAAGAACTCTGAACACCAGGGATATTGTTGTAAATATGAAGATAGATGGACTGGCCTGTTTGGGCTGCTCTGCTCTGAGCTGGTGGTTGGGACTCATGCTGAGTACAGTTTACATTTGGTACCTGAAGATCCATCGAATAGAAAGAACCCAAGATCTGTTTGTGCGTCGCATGTATGAAGGAGCGTTTCTGGAACAGTCAATGTTGTTAAACACCCGTTTTGAAATTAGAAAGAAAATCAAGGAGAAAAAGTGTGCAAAAGGAACCATAAGAGTGTTTCTGTGTGCAACGATGTGGCACGAGACCTACGATGAAATGATGAAGATAATCATTTCTATGTTAAGGCTTGATAAATACAGGCCCAAGACAAAGGAACAGAGCGATGTTGAGTTTGAAttccatatttattttgatgatgcTTTTAAGGATGATGATAATGGAAGGCATGCAAATGAATATGCTGAAATTCTTGTAGAAGTTATTAAAGAAGTTTACAGCATTTTCAGTGAAGAGGATCCATGTGTATTCAAGGGAAAGTCAGCACTACCACATCAGAAAATCATAAACACCCCTTATGGGGGTAGACTGGAATACACTCTGCCTAAAGGCAATTTGATGATGGTTCACCTCAAAGACAAGACACTTATCCGTCACAAAAAAAGATGGTCGCAGattatgtatttgtattacatTCTTGGTTGGAGACTGAACAGACAGTACTTCAAAAAGCTTAAGGCAGGTGAAGAAATGCATTACCTTAAGGAGAAATTGAAGaaagagagggagaacaCATACATCTTGGCCCTGGATGGAGATACTGATTTCCAGCCGTCTGCAGTCATGCTGTTAATCGACAGACTTAAACTCTACCCAGAAGTTGGCGCTGCCTGTGGCAGGATTCATCCAACAGGCACAGGGCCCATGGTGTGGTATCAGAAGTTTGAATATGCGGTGGGCCACTGGCTGCAAAAGACTGCAGAGCACGTGTTCGGCTGTGTACTGTGCAGCCCTGGTTGTTTCAGTCTTTTCAGAGGAGATGCACTCATGGACGACAACGTCATGAAGAGATACACAACCAAAGCCAGTGAAGCCAGCCACTATGTCCAGTATGATCAAGGTGAGGACCGCTGGCTGTGTACTCTGCTGCTGCAGCAGGGCTGGAGGGTGGAGTATAACGCAGCATCTGATGCCTACACCAACGCTCCACAGGATTTTAAAGAGTTCTATAACCAGCGCAGACGCTGGGGACCCTCTACCATGGCCAACACCATCGACCTCTTGGGCTCAGGAGGACTGACCTCTCAGAAAAACAGCTCTATCTCAAAACTTTACATCTTGTACCAGATTATCAGCATGGCAGCTTCAATCCTGGGCCCTGCCACTATCTGTCTCATGATATCAGGAAGCTTTGTGTTCATCTTGGAAATGGAAGAAAATATAGCCCTAGCTTTGGCCATAGTGCCCCCCACTGTTTACCTCATCCTGTGCTTCAAACTCAAATCTGACACACAGATTAAAATTGCAGCAGTCATGAGTGTATTCTATGCATTTCTCATGGCGGGAACAGTTCTCTCAATCATAGGTGATTTAGTGAAACAAAATACTTTTCTGACCCCCAGTGGTCTGTTCCTCATCGGTATGGTGGTTTTGTACATCATCACGGCAGCTTTACACCCTCAGGAGTTCTCATTGGTCATCTATGGACTGTTATACTTCCTCTGCATTCCTAGTGGATATCTACTCCTAGTTATTTACTCCATAGTCAACATGAACAATGTCACGTGGGGCACTCGTGAAACCGGCAGCCAGGCTAAAACTACTGCAGTCGATACCATCAAGAAGAAGATCATGAACGCCACATGCTGCAAATGTCCATGCTTGCAATCTCAAGATCTGAGTGAGAAGATGTTACAAGCAGGAGCtacaacaaaaactgaaaagccacataatgaaaacacaaaggAAACACAAAGGGCTCATGAGTTGCAGTTTAGGGCTCATCAAACTTGGATTGAACATCTACAGATGAAATCCTACGAATTTCCCTTGGATGAATCTGCACTGCCTTTGGATGAAATAAATTTTTGGAGAGATCTGCAGAAGAAATATCTGGAACCTCTAAAAGAGAATAAAGAACAACAGGAAAAAGTTGCTGATGATCTGAGAGAACTTAGAAATAAGGTTACATTCGCCTTTTTCTTTTGCAATGCACTTTGGCTGGTGGCAACTTTCTTCCTTCAGGCGATTGGTGACTCAGTCTCTATAAAGATCCCAAAAATCTATCCCAATGGGACATATGACCCAACAGAAGTGTTTTCCCTAGATCCAATCGCACTGATGTTTCTACTGAGCTTCACAGTGCTGCTGTTAATGCAGTTTGTTGCAATGCTTTACCACAGAATCTACACATTAATCCATTTTGTGGCATATGCTGACACAGAAATTAAATCCCATAGAAAGCAGTCACATAATTTGCATCAGATCCTGGACTCAAACCACCAGTCTGAGACGTATGGGCCGGATACAGCTTTATGTTATAGCAACCCATCTTCTAGGTCTATTACTTcagtataatgcatttaattacattgtTCTGGTATGAAACTCTAAATGGCGCTGCAGTCCAATCAGGTCTATCTCAGTCTGATCTAATGACATCATTACCACACGGCAGAGCTGATGGTTCTCTGTTGAATCAGTAGCCAATCAGCTCTCTGCtcaacaataatatatatgacTGCCGTAGCAGTTTTGCAGCGTGCTTCAGAAAcactccaccttccccagctccacctgtatagaacTGCTACACTGGTGCTGCAGCAGAGCAAGTACTGACAAGCAAGaaatgctgctgctgcaaataTAACATACACAACATAATCCATAGTGTGAATCATCTTGTAGTAACTTGGAGAGTTGTCAtgacaaaatattgtttataatcCAGTGTGCAAAAATGCAGTGCAAATAGAATGTTTcgaatatttatttagcttttaaacCTGAATTCAGAGTAAAACATCAGACCTgacaattaataaatgatttgcacaatatgcaaattaataattacacacgtaaaataaattatttagtaCTGAATTTATTAGCATTGAATATTATTGACATTATATGAAAAGACCAATTATGTGTAGTTTGTTAGCCAGTGTATTATTTTACTTcctttttattcaataaattgcactgttatataaattattttagatatatttcttcaaacacatttattgtagagtacatttaaataaattaaggtGATATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107553937

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216514.1 True 4468 mRNA 0.41 19 24493933 24502864

Neighbor

gene id symbol gene type direction distance location
nr1h4 nr1h4,LOC107749275,LOC107686236,LOC107672305,LOC107740216 coding upstream 5012 24474237 ~ 24488921 (+)
slc17a8 slc17a8,LOC107553956,LOC107672209,LOC107686235,LOC107583818 coding upstream 20982 24460916 ~ 24472951 (+)
si:dkey-103i16.6 si:dkey-103i16.6,LOC107749280,LOC107664689,LOC107553976,LOC107672161 coding upstream 143776 24338891 ~ 24350157 (+)
si:ch73-62b13.1 si:ch73-62b13.1,LOC107749314,LOC107740436,LOC107672215,LOC107553958,LOC107583921,LOC107664683,LOC108425440 coding upstream 178953 24308176 ~ 24314980 (+)
zgc:153031 zgc:153031,LOC107664682,LOC107583831,LOC107672313,LOC107553959 coding upstream 202474 24287138 ~ 24291459 (+)
LOC122322916 LOC107749305,LOC107686322,LOC107553937,LOC107686321,LOC107553936 coding downstream 9268 24512132 ~ 24522487 (+)
ube2na ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding downstream 24347 24527211 ~ 24534508 (+)
nudt4a LOC107740279,LOC107672310,LOC107553971,LOC107686239 coding downstream 32432 24535296 ~ 24549380 (+)
eea1 LOC107686240,LOC107583815,LOC107672259,LOC107740258 coding downstream 47568 24550432 ~ 24570221 (+)
LOC122362645 itpr2,LOC107672258 coding downstream 88039 24590903 ~ 24659950 (+)
G128859 NA non-coding upstream 34999 24458719 ~ 24458934 (+)
G128857 arntl2,LOC107749276,LOC107686234 non-coding upstream 48734 24444502 ~ 24445199 (+)
G128856 NA non-coding upstream 50774 24442373 ~ 24443159 (+)
G128841 NA non-coding upstream 53401 24436038 ~ 24440532 (+)
G128855 NA non-coding upstream 58553 24435074 ~ 24435380 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding downstream 21663 24524527 ~ 24525054 (+)
G129038 NA non-coding downstream 161587 24664451 ~ 24728979 (+)
LOC122362653 NA non-coding downstream 164620 24667484 ~ 24669844 (+)
LOC122362654 NA non-coding downstream 232323 24735187 ~ 24737012 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 336198 24839062 ~ 24856231 (+)
G128858 NA other upstream 36373 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 757085 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2055254 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2081976 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3852874 20634845 ~ 20641059 (+)
LOC122323037 NA other downstream 80981 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 791879 25294743 ~ 25309740 (+)
mt2 NA other downstream 843528 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1418403 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1449466 25952330 ~ 25962581 (+)

Expression


Co-expression Network