CI01000001_02416674_02429967 (RARG)


Basic Information

Item Value
gene id CI01000001_02416674_02429967
gene name RARG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2415850 ~ 2430607 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02416674_02429967.mRNA
AGGTAATGAGCTCACAGACAGCTGTTGACAGCAACTGCTACTGCTCAGCACCTTTAATGAAAGCACACACACCTCTCAGCTCCATAACTAACACTTCTTTTGTACCACATCTGTGTTGCAGAGATGTAATTTTTAAAATTGGCTTCCATAAGTAATTTTACTAGGTAGGTAAACCTCTAAATTATTATTTTTTTTTGCTATGCAAATGGAGTAATAGTATTTGGAAATAAAAAAGTTCTTTTATTTATTTTCTTGTCTTTTTTTTTTTACTTGAAATTAATGGGGGGGTTTCATTTTAATTTTTTTTAAATTTTGTCAATTACTGAGTTTTTTTTTTGGGTTCGAAAACATATCCCCCCACCCCCATTAGCATTAGTTGTTTTTTTTTAAGTAAAAAATTGACTTTTTTAAAGCAAGTTTGCCAATTAAATGGCAAAATAGGATCTGGAATTAGTTCAGTTCGGCTGTTTCTCACAGTACATCAACATTTTTACTCTCCCTGCAATATGTGAATTTAGAAATGTCGAAAAACAGCTTGCGGTAAGATAAAGCCTGCAATCAGTGAGAATACATCCAGCGGAAAGAAACAGTGATGCGGTGCAGAGGAAGGAAATGGGGTTGTGTAGTATAAGGTGGTACGATGACAACAGCATGTGAGGAGGATCTGGGTGATGGCAGGAAGCCGTGGGCAATGAGACACAGAACCAGAGAAAGAGCCATGGTCGGTTCCCCTCATCAGGAAGTTGGCAGCCAGGATGGCTGTGTGTCCTTGCCCATCAGGCACCGCTCGGAGAGAGGGGGCCCTGCCAGTCAGTCTATCAATCACACCGCTCCAAAAAACCTGGCCAATCTGTGGCCCGTCTGCCACACTGGCTACATGCACAACAAAGCAGTCTGTCCACCCAACAGCGCGGTGGAGACCCAGAGCACCAGTTCGGAGGAGATGGTGCCCAGCTCCCCTTCTCCACCACCTCCGCCTCGTGTTTACAAGCCCTGCTTCGTCTGCCAGGACAAGTCTTCTGGGTACCACTATGGTGTCAGTTCTTGCGAGGGTTGCAAGGGTTTCTTCCGTCGCAGTATTCAGAAGAACATGGTGTACACCTGCCACCGTGACAAGAACTGCCAGATAAACAAGGTCACACGCAACCGTTGCCAGTACTGTCGGCTGCAAAAGTGCTTCGAGGTTGGCATGTCCAAGGAAGCTGTGCGCAATGATCGAAATAAGAAGAAGAAGGACGTGAAGGATGAGGTCGTTCCGCCAGAGAGCTACGAGCTGAGTGGGGAACTGGAGGAGCTGGTCAACAAAGTGAGCAAAGCACATCAAGAGACCTTCCCTTCACTCTGCCAGCTGGGAAAATACACCACAAACTCAAGCTCAGACCACCGGGTTCAGCTGGACTTGGGCCTATGGGACAAATTCAGTGAGCTTTCAACCAAGTGCATCATTAAAATTGTGGAATTTGCCAAACGCCTTCCGGGCTTCACCACCCTCACCATCGCAGATCAGATCACCCTCCTTAAATCAGCTTGCTTGGACATTCTAATGCTGCGAATCTGTACACGATACACACCGGAACAGGACACAATGACCTTTTCAGATGGGCTGACCCTTAACCGGACTCAGATGCATAATGCTGGCTTCGGCCCGCTCACTGACCTGGTGTTTGCCTTCGCTGGTCAGCTTCTGCCCCTTGAGATGGATGATACTGAGACTGGCCTCCTCAGCGCCATCTGCCTAATTTGTGGAGACCGAATGGATCTTGAGGAGCCTGAGCGTGTAGATCGTCTGCAGGAGCCCCTGCTGGAGGCTCTGAAGATCTATGCACGCCGCCGCCGACCCAACAAACCCCACATGTTCCCTCGGATGTTAATGAAGATCACTGATCTACGTGGCATCAGCACCAAGGAAAGAGCCATGGAGGAAGAGCTCAATGAGGAAGCTTTCTTCTTCCAGGGCAAACGCAGAGCCTTACCTGTACAGACACTCGTAACTCAGGCCACTCGGTCAACGATGAGAGACATCACTTGTAGGGTTCAGCTCCTGTCAGGGAGCCCATTTCCAAACAGAAACACCCACATGTCCATTACCTTCAAGTCTCTGCATCATGCACATGATGTCATACTGGACCGGTTTCACTCAATGCTGCACGTGTCATTACGGGATTTGACCTCATCTGCCTAGACGATAATTCAGGATAACTACACAAATGCATCTGGATGATTTTCTGAATCTCATGTATCATGATGAAATGCAGGAATGCGTACCTGTACTAACACACACACACACACACACACACACACTTGAAAAGCATGCTTGTTATACTACATATATTCAGAACTCTTGCTATAAAAAAGAAAGAACATGAAATTCAGACTCAGGGCATCTCTGTAAGGACCAAACGCTTGCTGTCTGGCGACAGCCTTGAAACAGGCAATATTTATGTGTTAGGTTAGAGAAATCACCATGAACTGAAATAATTCTGTGTATCTTACACAGTCATTGGAGATCTTTCATCTTCATCTTAGAAATAGATTTGGTGGGTTTTTCTTTTTCTAATTTTATCTAATATTTTAGTCCATTTTATTGCCAAAAACACACAGTATGCAATTTGGTGGTCGTGTGCCACTGAACATTAAAAGGTATCAGTCTCAGTCAAGCAATACGACTATGACCAGAACTCAGCTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTTGTGTGTTGAATGTGAGGATGACTGCACTCAATAAGCTGTAGTGTAGTACATTGTTAAATGAATGTCATCACGCTGGTGCTGTCAGAGAATGTGTGAGCTGTCATACTGACCTCTTCTCCTTCAGAGTTGCGCCACAGCCACACGTATAGCAAGCGGAATGTTGAGATTAACTCTTCGTCATATTTTTCTTGTTCTCTCAACTTGGCTAATGTATTGTCAGTCCTTTGTTCGTGTTCAACAAATTGTTATATAAAAAGCCATATAAACAATAAGAGGCACAATAAA

Function

symbol description
rarg Enables sequence-specific double-stranded DNA binding activity. Involved in response to retinoic acid and retinoic acid receptor signaling pathway. Located in nucleoplasm. Part of chromatin.

GO: NA

KEGG:

id description
K08529 RARG, NR1B3; retinoic acid receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02416674_02429967.mRNA True 3006 mRNA 0.45 9 2415850 2430607

Neighbor

gene id symbol gene type direction distance location
CI01000001_02343039_02351117 HOXC13, HOXC13BA, HOXC13A, HOXC13AA, HOXC13AB coding downstream 64733 2342242 ~ 2351117 (-)
CI01000001_02339253_02340813 HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12 coding downstream 75037 2339253 ~ 2340813 (-)
CI01000001_02327669_02329891 HOXC11, HOXC11AA, HOXC11AB, HOXC11A coding downstream 85959 2327669 ~ 2329891 (-)
CI01000001_02318724_02321379 HOXC10A coding downstream 94471 2318724 ~ 2321379 (-)
CI01000001_02305032_02310500 HOXC9, HOXC9A, HOXC9AA, HOXC9AB coding downstream 104768 2305002 ~ 2311082 (-)
CI01000001_02510977_02523145 GDAP1L1 coding upstream 80227 2510834 ~ 2523145 (-)
CI01000001_02547325_02557711 TUBA1C, TUBA1B, TUBA1A, TUBA1D coding upstream 116588 2547195 ~ 2557725 (-)
CI01000001_02570315_02577096 PMELB coding upstream 139382 2569989 ~ 2577122 (-)
CI01000001_02581454_02591012 CCNT1 coding upstream 150707 2581314 ~ 2591012 (-)
CI01000001_02641721_02653037 ACP1 coding upstream 210939 2641546 ~ 2653037 (-)
G14344 NA non-coding downstream 12102 2403177 ~ 2403748 (-)
G14194 NA non-coding downstream 16932 2398155 ~ 2398918 (-)
G14335 NA non-coding downstream 47743 2367858 ~ 2368107 (-)
G14304 NA non-coding downstream 260967 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 264394 2151126 ~ 2151456 (-)
G14214 NA non-coding upstream 39588 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 193700 2624307 ~ 2624520 (-)
G14458 NA non-coding upstream 231681 2662288 ~ 2662712 (-)
G14383 NA non-coding upstream 327460 2758067 ~ 2839789 (-)
G14492 NA non-coding upstream 457217 2887824 ~ 2888448 (-)
CI01000001_02258523_02262621 NA other downstream 118638 2258442 ~ 2263103 (-)
G14228 NA other downstream 359372 2055974 ~ 2056478 (-)
G14219 NA other downstream 420952 1994210 ~ 1994898 (-)
G14104 NA other downstream 648392 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 2018717 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1961707 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2045677 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2138475 4725927 ~ 4728210 (-)
G15736 NA other upstream 2370294 4800901 ~ 4801395 (-)
G16332 NA other upstream 2520082 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021855 rarga coding NC_007134.7 CM002907.2 35847200 ~ 35963735 (+)