herpud1 (herpud1,LOC107686272,LOC107549637,LOC107740310,LOC107672290)


Basic Information

Item Value
gene id herpud1
gene name herpud1,LOC107686272,LOC107549637,LOC107740310,LOC107672290
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25381708 ~ 25387860 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216547.1
ATGAGCAGAACGAAACTTCTTGAAATCAGGAAGGAACCTCTCTACCTTTCACTATCGCGTCGCGAAGTCTTCGTCAGTTAGTGCACACATTTCATGCGTTTCCTAATATATCTCTAGTTGGCTTGACTAAGAACGAAAATGGAAGATTGCAAGGTCTCGGATAAAGAGATCTCGCTGGTCATTAAAACGCCTAATCAGTTTCACGGCGATCAGCTGATCGAGGGAGTTCGCGTGGACTGGACCGTGAAAGACCTCAAATGTCACCTCTCCAAGGTTTATCCCACCAACCCGGCTGAGAAAGACCAAAGGCTCATTTTCTCAGGCAAACTGCTTCAGGACAACCTGCTTCTGAGTGATGTTTTCTCAAAGGTTCCTTCAGAAACCAAGCCCACTCTTCACCTGGTGTGCGCTGTGAAACCCCAGCCTGCTGCCCAACTTGGAGCAAGACCCAAGGTGACATCAACACAACCGCAGAGTTCCCATCCCTCCTCGCTAACTGCTAGCCAAAGCTCAGAGTCTTCAGGGCCATCCGTGACCTCTGTGCACTCCATGGACGGCCTTAGACAGCGAGGCCATGCTGCCTGGCCTAGCACTAACATGTCTACGCCTGTAACAGCAGCGATGACCCACCCAGCCTTCCCCACATACTCCCTTTACAGTCCACAACAGCTCCTGTGGTTGCAGCAGATGTATGCCCGCCAGTACTACATGCAATATCATGCTGCCATGGCAGCCGCTGCCTCCGCTCCAATAACTGCCCCTGCTTCCTCGCTCCCTCATCAAGCTGCTGTACCTGCAGCTTTACCCAATCAAGGGCCTATTAACGACCTGCCAGCTAATCAGAATGCCCCAGGTCCAGCATTCATCAACCCAGAgggagccaatcagaatctGCGAATGAACGCCCAGGGTGGGCCTGTGATGGAAGACGAGGAGGACATGAACCGCGATTGGCTGGATTGGGTGTACACCGCATCACGATTGGGTGTCTTCCTGAGCATTGTGTACTTCTATTCCAGCGTGAGCCGCTTCATCCTGGTCATGAGCAGCCTGGTTATTATGTACCTacaCACAGCAGGTTGGTTTCCTTTTAGACGGAGACCCCAAGCCAGGCCTCACAATGAGCCAGCACCAGAAGTCATTCAGAaccaacaaaaccaaaatgagGACAGACTTCCAGCACCCGTGCTGCCCCCTGGTGAAGTGCAGGATGATGGTGTTGCTGAACCCCCCATGATGGCAGTGCCTGTTCCCCCAGTTAGAGCACCCATTCTATGGACAGCCTGGGTGTTTTTCAAAGCCTTTTTTGCTTCTTTGATACCCGAGGCTCCACAGGGTGTGGCAAACTGATCCACAAAATTGGACTCCAGAGTCCTTGACTATTTAGACCGGACATTATAAATGAAGGCTACAAGTACTAGAAGCGGTAGCACTTTCCAGTCTTTTGGCTATGTGACCAATGGTTGCACATTCTGTATAGACAAGCTTTTGGACGTGGAGTTGTAAATATTGCTGGACAATTTTTGCACAGCACTTTAAATAACCGCAATGGCTGGAATCAATGATCTCCTAGCCTGATCCTCTTATATAGGCTCCTGTCAACAGGGCTTCATTTTCTTGAAGTGCTCTACGGTTGGTGATCCAAGGATTAAACTCATGGGATTATCTTATTAAGGTTCTAGTATGATGGACAACGAAGGCCATATATTGATTTTGTTCTAAGTGCATGAATAGATGGAGGGTGCTTGGGAGAATGCATTTGTGGCACTTTGAAGCTAATGGTGTTTATGCAAGTAAAAATATGCTGACATGGTCTGTTCTTTAATTGCGTTCCACCTGTGAAATGagtaatgttaatatttatgaagGAGGTTTGGTATGCATTCAAGTATTTGTGATTAGAATTTGCAATTCAATGAGCAGTGAAGAGCGTTGTTGACCTCTGGATGAAAAGAATGAGAGTGAACTTCACTTTGGATTTTGCATCTTCTTTGCATGAAGGAACTGCACTTTGGTACCTGCAAGAGAACAGAAATTAAGAGAGTAATAGTTCTGAGAGACTCGAGTTTTTAATCTGGTATTTACCAACACTGTAGCATAACTGTCATTTCATGTATAAAATAGCTttgttattaacattattaagaTAATCCCCTTTGTACctggaaatgaaaaataaatacatattctgtg

Function

symbol description
herpud1 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in several processes, including endoplasmic reticulum calcium ion homeostasis; endoplasmic reticulum unfolded protein response; and regulation of response to endoplasmic reticulum stress. Predicted to act upstream of or within response to unfolded protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human HERPUD1 (homocysteine inducible ER protein with ubiquitin like domain 1).

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein isoform X2

GO: NA

KEGG:

id description
K14027 HERPUD1, HERP; homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216547.1 True 2193 mRNA 0.47 8 25381708 25387860

Neighbor

gene id symbol gene type direction distance location
slc12a3 slc12a3,LOC107740340,LOC107583876 coding upstream 565 25371705 ~ 25381143 (+)
nup93 nup93,LOC107549634,LOC107740311,LOC107583877 coding upstream 10241 25349481 ~ 25371467 (+)
phaf1 si:dkey-102f14.5,LOC107686270,LOC107738752,LOC107583793,LOC107549632,LOC107740317,LOC107672279 coding upstream 47703 25322656 ~ 25334005 (+)
LOC122362888 LOC107686267,LOC107738755,LOC107738765 coding upstream 87093 25290002 ~ 25294615 (+)
trhr2 trhr2,LOC107686265,LOC107738778,LOC107549620,LOC107740321,LOC107583797,LOC107672195 coding upstream 193964 25176932 ~ 25187744 (+)
LOC122362468 cetp coding downstream 1174 25389034 ~ 25394241 (+)
nlrc5 nlrc5,LOC107580006 coding downstream 7022 25394882 ~ 25413257 (+)
cpne2 cpne2,LOC107583787,LOC107740309,LOC107672324 coding downstream 30003 25417863 ~ 25436773 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding downstream 57729 25445589 ~ 25457287 (+)
si:ch211-216l23.2 LOC107549641,LOC107740307,LOC107583785,LOC107672316 coding downstream 70138 25457998 ~ 25464103 (+)
G129262 NA non-coding upstream 32670 25348756 ~ 25349038 (+)
G129246 NA non-coding upstream 93171 25288143 ~ 25288537 (+)
G129135 NA non-coding upstream 239849 25063454 ~ 25141859 (+)
LOC122362644 NA non-coding upstream 332103 25034118 ~ 25049605 (+)
G129270 fam192a non-coding downstream 52188 25440048 ~ 25442441 (+)
G129360 NA non-coding downstream 274637 25662497 ~ 25663585 (+)
G129368 NA non-coding downstream 287211 25675071 ~ 25675310 (+)
G129370 NA non-coding downstream 288697 25676557 ~ 25676861 (+)
G129435 NA non-coding downstream 579156 25967016 ~ 26221023 (+)
mt2 NA other upstream 33114 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 71968 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 793371 24583845 ~ 24588337 (+)
G128858 NA other upstream 924148 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1644860 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 533407 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 564470 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 841234 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 916027 26303887 ~ 26306806 (+)

Expression


Co-expression Network