alx1 (alx1,LOC107672210,LOC107740463)


Basic Information

Item Value
gene id alx1
gene name alx1,LOC107672210,LOC107740463
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24795815 ~ 24801103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216593.1
gttgaacaacaacaacaacaacagcaaaaaaaaaaaggttaaagtaaataacactaaaaaagaacaaagatgATATTTTCCGAGTTAAATGCAAATACTTATTTGTagtttaaatactatttttacaCAGTTTAACACTTAAAACAGCGCACTCAGATTTATCAGATAATAATCATTAGGGATATCCAAACACTGAAAGCGAAAGCAAGTGTAATTGTTTCATTTCGGGTCATCTCAGAGTTTCATAAATCTTATTTAGTGGCTGTGCATGCGCGTGGGTGGAGTTTCACCTTCTCCATATTCAGAAGTTGGGTGGCTGCTTGAAGCTCGCGCTCTTCGCCGTATAAAGAGAGGCCCTCGGTCTCTTTAAGACAAGACAAATTAACGACTTGTACAAATAATTGGCCGCATTGCTTCATTTTTTGACATCACTAAAACATTTATGGTGTCCGCTGACGCGCTTCATGCTTGAGACGAGGCCAGAGGACCATGATGGAGTACTTGAGCGACAAGTTCTCCTTGAAAAGTCAAGCGATTAAAGGCAGCGATTACTACATGGACCAAGTCATGGAGACTTTAGACAATGTGCAGTACTACAACAAGACATCACCTAAATGCGTGCAGGCCTTCTCGATGCAGAGCAATGATCAACACGCCACCATGGACAGATCGTCTCCGTGCGACAACCAAAATAGCGTGAATTACTGCGCTCCTAAAACCGAAGACAGCGGCCTTCACGCGATGGAGAACTGCTGCAGCATCAGAGTCTCCCCGGCCGCGGCCGGACCGGACAAGACGGACCTGGACGACATCGGAGAAAAATGCGACAGCAACGTGTCCAGCAGCAAGAAGAGACGCCATCGCACGACCTTCACGAGCGCTCAGCTGGAGGAACTAGAGAAGGTCTTCCAGAAAACCCATTACCCAGATGTTTACGTGAGAGAACAGCTGGCCATGAGAACAGAGCTCACGGAGGCCAGAGTTCAGgtatggTTCCAGAACAGAAGAGCCAAGTGGAGAAAGCGAGAAAGATACGGACAGATCCAGCAGGCCAAAAGCCACTTTGCAGCGACCTATGACATATCAATGCTGCCCCGGACGGACAGCTACTCACAGATTTCCAACAACTTATGGACGGGTCCCACTCCAGGCAGCTCTGTGGTCTCGTCCTGCATGATCCCGCGGGGTTCCCCTCCCTGCGTGACGTCTCCCTACCCCCACTCGCCGAGGGCCGCTGAGCACAGTTACGTGGGATTCCCCAATCACCAGCAAAATCAGTTTGGAATGTCTCTCAACAACTTCTTCGCCGATTCACTTCTGGCTCCTTCACCGAACAGTCACGCCGCGTTTGAGACCAAACCCGAGTTTGAGCGGCGGTCCTCCAGCATCGCTGTGCTGCGGATGAAGGCGAAGGAACATGCAGCCAACATATCTTGGACCGTGTGAACTCTGAACTTACTCTAATAGTCCTGATCTCAACAGTCTTTACCTATAACGGCACAGTTACCTTCatgaatttgttttcattttatttaatttttttattggaacaacAAAGATATCGGCCGTAATTAAGTTTTAAGTcgtttcagaaataatttaattaggaAACCTCTTGATTAAACAGTAGTGATTCTTATTTTGTCTTAGCATCTCTTGTTGTGAATATGAAGAACTACAGTATTATACGCTCATGACTTTGACAGAGATGTTATGGCTGACATACTAACACTATGTCTTTGTGCTTTGCAGCAAAGCTGTTAAATGCTCTCTAGCTGTGGCTAGTCTACAGTGCCACATGCAAAGgagcaattttttattttaag

Function

symbol description
alx1 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within embryonic cranial skeleton morphogenesis and neural crest cell migration. Predicted to be located in nucleus. Is expressed in head; head mesenchyme; neural crest; pectoral fin bud; and presumptive cephalic mesoderm. Orthologous to human ALX1 (ALX homeobox 1).

NR:

description
ALX homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09334 ALX1, CART1; ALX homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216593.1 True 1826 mRNA 0.45 4 24795815 24801103

Neighbor

gene id symbol gene type direction distance location
lrriq1 lrriq1,LOC107672332,LOC107740429,LOC107583887 coding upstream 2716 24769396 ~ 24793099 (+)
LOC122362648 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 44712 24744865 ~ 24751103 (+)
LOC122362646 bhlhe41,LOC107686242,LOC107553967,LOC107730473,LOC107672284,LOC107583813,LOC107740304 coding upstream 54455 24739025 ~ 24741360 (+)
LOC122362647 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 111877 24677660 ~ 24683938 (+)
LOC122362651 bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304 coding upstream 119966 24671802 ~ 24675849 (+)
nts nts coding downstream 35144 24836247 ~ 24840156 (+)
eif4g2b eif4g2b,LOC107730533,LOC107569652,LOC107672256 coding downstream 189480 24990583 ~ 24999270 (+)
LOC122323238 NA coding downstream 194668 24995771 ~ 24995950 (+)
lyve1b NA coding downstream 204976 25006079 ~ 25008464 (+)
rnf141 rnf141,LOC107686251,LOC107730548,LOC107672299,LOC107740332 coding downstream 208184 25009287 ~ 25013620 (+)
LOC122362654 NA non-coding upstream 58803 24735187 ~ 24737012 (+)
G129038 NA non-coding upstream 66836 24664451 ~ 24728979 (+)
LOC122362653 NA non-coding upstream 125971 24667484 ~ 24669844 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding upstream 270761 24524527 ~ 24525054 (+)
G128859 NA non-coding upstream 336881 24458719 ~ 24458934 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 37959 24839062 ~ 24856231 (+)
G129127 NA non-coding downstream 199627 25000730 ~ 25000930 (+)
G129125 NA non-coding downstream 212647 25013750 ~ 25016984 (+)
LOC122362644 NA non-coding downstream 233015 25034118 ~ 25049605 (+)
G129134 NA non-coding downstream 241985 25043088 ~ 25043820 (+)
LOC122323037 NA other upstream 207478 24583845 ~ 24588337 (+)
G128858 NA other upstream 338255 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1058967 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2357136 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2383858 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 493640 25294743 ~ 25309740 (+)
mt2 NA other downstream 545289 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1120164 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1151227 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1427991 26229094 ~ 26332010 (+)

Expression


Co-expression Network