CI01000001_02570315_02577096 (PMELB)


Basic Information

Item Value
gene id CI01000001_02570315_02577096
gene name PMELB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2569989 ~ 2577122 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02570315_02577096.mRNA
ATTAAGGTGCCAACAACAAAGACACAATGAAGCTACTTTCAAGAATACTGATAGTGACCTGTTTGTCTGTGGCTTTAACAAGACAAGTTGACAGAAGCAACTCGAAATCCAGATTCAATCAAAATCAGACATGGAATACAAAACGCTTCCCAGTTTGGAAAGATGGAGACTCACTCAACAAAAACAGCTGGACAGGTGGACAACTGAAGTTTGATGTGGGAAATGATGCACCCACCTTGACCGGTGCCAAAATCACCTTCACCATTGACATTGTGTTCCCTCACAACCAGAAGGCACACAGTTCCATGAAGGAGAGCCTGTCTATCCTAAGGAGAACTCTGCAGATGCATGGAACGCTGTCNCACAAATATGTCAACTTTTCTAATTTAGGCACACAGTTCCATGAAGGAGAGCCTGTCTATCCTGAGGAGAACTCTGCAGATGCATGGAACGCTGTCTTCCCTAATGCTCCTCTCCTTCCCAGACAGGGGGACAAGCAACCTCCCTATGTGTTTGTATGGAAAACCTGGGGTAAATACTGGCAAGTGTGCGACGGACCGTCCTCATCACTGACCATTGGCACTGATGATGTTCCTCTGGGCTCTTATATGATGGATGTTGTCATCTATCACTACAGGCAAAAAGATAAATTCATCCCTATTGGATACGCATCTACACAGTTTAGTATCACCGACCAGATTCCCTTTGCGGTTTCCCTGACTCAGGTAAATGACAAAGATGAAGGTGATCGGATATTCATCCAGAACAGAGCGGTGGCCTTCAGCATCACCATTCATGACCCCAGCCAATACCTGAGCAAATCAGACGTGACTTTTAACTGGAATTTCGGGGATGGCAGTGGCACTGTAATCTCCAGGGAACTGACCGTCACTCACACTTACATTACATCTGATCATGCTACCAATCAGTCTTCAGCTCCCATTCTGAAATCCACTTCTGCATCTACAATGAAAATGATTCCACCTGCACCTACAAATGAAGTTCCAACAAGATCCAGCCTTGAGAAGGTCTTTGACCTTAGATCTGGATCTAAGACATCTGAAACACTGAAGACAACTACTAAGGGCATTGAAAGTGTGCAGATCGTCCAGGTGGCCGTAGCTGATGGTTTACTGCTAACAGAGATGGAGCAGAATGCTGTTGATTTCACTGTTTCCTGCCAAGGAAGCCTCCCCACTGAAGTGTGCACTGTAGTGTCGGATGCAGACTGCCATATGCCAGTTACGACCATCTGCAATGCTGTGAGCCCCTCCTCAGACTGCCAACTCATCCTTCGACACTTCTTCAACGACTCTGGGATCTTCTGTATCAATGTGTCTATGACGAATGATGTCAGTATGGCGGTCACAAATGCCAGGGTTAATATTAACATAGGTGCCGCTGCCCTGTTGTTAGGAATCCTGACTGTTGCAACAGCATTGGGTGCTGTGGCCTTTGCATATAAGCGTCTTAAAGGGTATCAAAGGCTGACCGAGGTCCCTGCATGCCAATCCAACAACGCTGGAGTGAGCTCTATACCAGCGCTCTTCTGGAGCCTGATGAACCAGCAGATGGTGGATCAGAAAAAAGGAGTAGTGTGAATTTTACTTAAAAACTAATGAAAATTCAACTGAAAAAGTAATGTTACGTTAGCACTATCTTGAATTGTGTAAAAGCATAAACCTTTTTTACCATTCCATTTTTTTTAATCTTTAATGTTTCAATTTGGATTTTTGTATTTTTATACACATATTTGACCCTAAATCATTTTTCTACAAAGACTTGTTTTTAATTACAGCATTTGTCTTAAATTTTGTACTTTAAACTTGAAGGGGAAACTATTGCCATTTGGGCCAACAAAGCATATTCAACAATATGTTAACAGTTAAAGTACCTTTAAACCCCTTTTTTAATGCAATTGAATAAA

Function

symbol description
pmelb Acts upstream of or within melanosome organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Predicted to be integral component of plasma membrane. Is expressed in optic vesicle; presumptive retinal pigmented epithelium; retina; and retinal pigmented epithelium. Orthologous to human PMEL (premelanosome protein).

GO:

id name namespace
GO:0042470 melanosome cellular_component

KEGG:

id description
K17304 PMEL, SILV; melanocyte protein PMEL

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02570315_02577096.mRNA True 1927 mRNA 0.43 11 2569989 2577122

Neighbor

gene id symbol gene type direction distance location
CI01000001_02547325_02557711 TUBA1C, TUBA1B, TUBA1A, TUBA1D coding downstream 12264 2547195 ~ 2557725 (-)
CI01000001_02510977_02523145 GDAP1L1 coding downstream 46844 2510834 ~ 2523145 (-)
CI01000001_02416674_02429967 RARG coding downstream 139382 2415850 ~ 2430607 (-)
CI01000001_02343039_02351117 HOXC13, HOXC13BA, HOXC13A, HOXC13AA, HOXC13AB coding downstream 218872 2342242 ~ 2351117 (-)
CI01000001_02339253_02340813 HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12 coding downstream 229176 2339253 ~ 2340813 (-)
CI01000001_02581454_02591012 CCNT1 coding upstream 4192 2581314 ~ 2591012 (-)
CI01000001_02641721_02653037 ACP1 coding upstream 64424 2641546 ~ 2653037 (-)
CI01000001_02679428_02695867 NA coding upstream 101655 2678777 ~ 2697902 (-)
CI01000001_02863703_02865768 NA coding upstream 285640 2862762 ~ 2865768 (-)
CI01000001_03083837_03089846 PLXNA1 coding upstream 506715 3083837 ~ 3090718 (-)
G14214 NA non-coding downstream 96400 2470195 ~ 2473589 (-)
G14344 NA non-coding downstream 166241 2403177 ~ 2403748 (-)
G14194 NA non-coding downstream 171071 2398155 ~ 2398918 (-)
G14335 NA non-coding downstream 201882 2367858 ~ 2368107 (-)
G14304 NA non-coding downstream 415106 2154382 ~ 2154883 (-)
G14445 NA non-coding upstream 47185 2624307 ~ 2624520 (-)
G14458 NA non-coding upstream 85166 2662288 ~ 2662712 (-)
G14383 NA non-coding upstream 180945 2758067 ~ 2839789 (-)
G14492 NA non-coding upstream 310702 2887824 ~ 2888448 (-)
CI01000001_03213566_03220085 NA non-coding upstream 641090 3213274 ~ 3220866 (-)
CI01000001_02258523_02262621 NA other downstream 272777 2258442 ~ 2263103 (-)
G14228 NA other downstream 513511 2055974 ~ 2056478 (-)
G14219 NA other downstream 575091 1994210 ~ 1994898 (-)
G14104 NA other downstream 802531 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 2172856 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1815192 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 1899162 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1991960 4725927 ~ 4728210 (-)
G15736 NA other upstream 2223779 4800901 ~ 4801395 (-)
G16332 NA other upstream 2373567 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location