CI01000001_02581454_02591012 (CCNT1)


Basic Information

Item Value
gene id CI01000001_02581454_02591012
gene name CCNT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2581314 ~ 2591012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02581454_02591012.mRNA
TCTATGGTTTGAACGGGTTAAAGTCGAACCACACCGCAGTCGCATTCCAGCCAGCGATGACGCGCTTCCTGTGACGCAGAGAGATTTTAAAACATTGTCCTTCTCAGTAATGGCGGCTACGTTCCCTTCGCCTTCGCTAAATAACAATAAATGGTACTTCACGCGCGAACAAATCGAAAACAGCCCTTCTCGCCGAGCGGGACTTGATCCCGACAAAGAGCTCTCGTACCGACAGCAAGCTGCTAACCTGCTGCAGGACATGGGACAGCGGCTCAACGTGTATCTTTTTCAGTTTGTGATTGCTCCTGCAGCTCTCTTTTTAGCTGCGAAGGTGGAAGAACAGCCCCGCAAGCTGGAGCATGTGATTAAGGTGACCCATGCGTGTCTCAATCCTCAGGACCCGTCTCCAGACACCAGGAGTGATACATACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATTATACTCCAGACCCTGGTCCTCCACTTTGGAAAATTCTGTTCTGGTGCACATAATGGTAATTTGTTTGAAAACTTTGACTATAACCAAATCGCCTTACAGGCCACTTGCAAGGAGCTTGGCTCAAAGATATCTCAGCAGTCAAGCACAGGAAGACCCATGTTTGTGATTCACTCACTCATCGTGTATGTTGTGTCTTTTGAGATCACCATTGATCATCCCCATACACATGTTGTCAAGTGTACTCAGCTTGTGCGAGGTGAGAACCAGCTGCTCACTGTAAACTGTCCTTCGTATTGCTCGGTAATGAGTACTTCTAGCCCACCAAGCTCACAGATTTCACGTCTGATCACGAGCTTTCCTTTTGTTCCAGCGAGTAAGGATTTGGCTCAGACCTCATATTTCATGGCAACAAACAGTCTTCACTTGACTACATTCTGCCTGCAGTACAGTCCTCCCATTGTAGCTTGTGTTTGTATTCATCTGGCCTGTAAATGGTCCAACTGGGAGATTCCGGTTTCCACAGACGGCAAACACTGGTGGGAGTATGTTGACCCCACAGTGACCCTTGAGCTGTTGGATGAGCTCACTCATGAGTTCCTGCAGATCTTGGAGAAGACACCCAGCCGCTTGAAACGCATCAGAAACTGGAAAGCTGCAGGTCAAACTGCCAAGAAATCAAAGGTGCAAGATGGTGATCAGTCAGAAGCCATTATGAACATGATCTCTATGGCATCATCCGACAGCACGTTGGCCGGACTCATGAGCCTCTCCGCCCCTCCCTCCGGTTCCTCCATGGACTCCACAGCAGACGACCACAGCGCTACAGCCTCATCCCAACACTGGCAGCCTTCCGGCAAGGAGCAGCCCATTGCCAACGAGCTCCACGCGCCTGCTAAGGTGTCTCTGAGCGAGTATCGGGCAAAGCATGCGGATGAACTGGCTGCTCAGAAGCGGAAGTTGGAGAATATGGAGGCAAGTGTGAAACAGGGATACGCCACTGCCGCACAGGCCCTCATGAACCAGCAGAGGAAAGAGAAGCACCATCACCACCAGCAGTCCAGCTCTGGTTCCTCAGACCTGAGCAACCCCTCACCCATCGTCCTGAAGATCCCACTGGATGAGCGATCGGAACGCAGTTCCTTAAAGATGCGCTTACCCACGCGGGGCCAGTCAGACGGCGGCGGGCACAGCAGCAGTAGCAGCAGTCGTGGATCCGAGCAGGACATTAAAGTGCGGATTCGGGTTCCAGAAAGGCGAAGTGGATCCGGAGAAGACGGGAAAACACAAAAACACTCAAGTTCTGCCAGCACCTCAGGAAGTAGCAAAAAGGTCCCTGGTGACTCTGTGCGAACGAGCTCTTCTTCGTCATCGTCATCTCGAAAAAGGACCCACTTGCCGGATCCTTCCACGGGCGCCCACCCCTCGAAAGTCAGCAAATCGTCCAGAAATTCATTTCAGTTGTCGACGCTTCCTGGAGTGCCCTCTCACACGATGGGTCACGGGGCTGACATCCTTCCCTCGCTGGGCCTCTCGCACCATCAGGGGAACTATTCGCACTCCAAGGCGGACAAAGCCGACACGAACGGCCATAATACGGGCGGCCAGTCCAACGAGTATCAGGACACATTTGACATGTTGAACTCGCTGCTCAGCGCACAGGGGGTGCAGCCAGCGCAACCTCAGATATTTGACTATCGCTCTCAGTACGGAGAGTACCGGTATAGCAGTAGCGCTCGCGGAGGAACCCAGCCGCCACCTTTACCCTCAGAACCACCTCCACCTCTGCCACCGTTGCCCAAATAAACCCCCTTCATCTTCCTCCCCTCACTTCACCCATCCACATACGCTGATCAGAACAGTCGTCTTGGGAGTCCTGGGATCCTTTCGTGCGTCCAACTTTCTGTGATGTTGAGTTTGACAGCAGAGTAATGTAAGGCAAAAAA

Function

symbol description
ccnt1 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of DNA-templated transcription, elongation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT1 (cyclin T1).

GO:

id name namespace
GO:0008024 cyclin/CDK positive transcription elongation factor complex cellular_component

KEGG:

id description
K15188 CCNT; cyclin T

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02581454_02591012.mRNA True 2412 mRNA 0.52 9 2581314 2591012

Neighbor

gene id symbol gene type direction distance location
CI01000001_02570315_02577096 PMELB coding downstream 4192 2569989 ~ 2577122 (-)
CI01000001_02547325_02557711 TUBA1C, TUBA1B, TUBA1A, TUBA1D coding downstream 23589 2547195 ~ 2557725 (-)
CI01000001_02510977_02523145 GDAP1L1 coding downstream 58169 2510834 ~ 2523145 (-)
CI01000001_02416674_02429967 RARG coding downstream 150707 2415850 ~ 2430607 (-)
CI01000001_02343039_02351117 HOXC13, HOXC13BA, HOXC13A, HOXC13AA, HOXC13AB coding downstream 230197 2342242 ~ 2351117 (-)
CI01000001_02641721_02653037 ACP1 coding upstream 50534 2641546 ~ 2653037 (-)
CI01000001_02679428_02695867 NA coding upstream 87765 2678777 ~ 2697902 (-)
CI01000001_02863703_02865768 NA coding upstream 271750 2862762 ~ 2865768 (-)
CI01000001_03083837_03089846 PLXNA1 coding upstream 492825 3083837 ~ 3090718 (-)
CI01000001_03092786_03156426 NA coding upstream 500536 3091548 ~ 3157420 (-)
G14214 NA non-coding downstream 107725 2470195 ~ 2473589 (-)
G14344 NA non-coding downstream 177566 2403177 ~ 2403748 (-)
G14194 NA non-coding downstream 182396 2398155 ~ 2398918 (-)
G14335 NA non-coding downstream 213207 2367858 ~ 2368107 (-)
G14304 NA non-coding downstream 426431 2154382 ~ 2154883 (-)
G14445 NA non-coding upstream 33295 2624307 ~ 2624520 (-)
G14458 NA non-coding upstream 71276 2662288 ~ 2662712 (-)
G14383 NA non-coding upstream 167055 2758067 ~ 2839789 (-)
G14492 NA non-coding upstream 296812 2887824 ~ 2888448 (-)
CI01000001_03213566_03220085 NA non-coding upstream 627200 3213274 ~ 3220866 (-)
CI01000001_02258523_02262621 NA other downstream 284102 2258442 ~ 2263103 (-)
G14228 NA other downstream 524836 2055974 ~ 2056478 (-)
G14219 NA other downstream 586416 1994210 ~ 1994898 (-)
G14104 NA other downstream 813856 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 2184181 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1801302 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 1885272 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1978070 4725927 ~ 4728210 (-)
G15736 NA other upstream 2209889 4800901 ~ 4801395 (-)
G16332 NA other upstream 2359677 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008642 ccnt1,ccnt2,LOC102787965 coding CM030126.1 CM030126.1 7387052 ~ 7402820 (-)