utp4 (utp4,LOC107749295,LOC107553989,LOC107748774,LOC107583899)


Basic Information

Item Value
gene id utp4
gene name utp4,LOC107749295,LOC107553989,LOC107748774,LOC107583899
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23928290 ~ 23936310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216813.1
ACAGAAGCTTCCGTTCCGGGTAAGAGGTAACCAACGTGGTGTTCTTGCAGCTCAACGTGTGTGCTATTTCTGAGTGATAAAACATCTGAAAGagagtaataaataaacaaaaaaagaagATCTCAGATCAGAGATGGGGGAGTTTAAAGTTCACCGGGTTCGGTTCTTTGACTACATGCCGTCGGGAATCAGAGCCTTGGCTTTCAATCGAGATATTGAAAGGATGGCAGTCGCAAGGATGGACGGTGCAGTGGAAATTTTCCACTGTTCAGACAGATTTTACCAAGAAAAGATCATCCCTGGCAGAGAGCAGTGCGGGATTGAAGGTCTGTGCTGGTTTGGCGAGCGTCTGTTCAGTGCAGAACTAAGCGGCGAAATAACGGAGTATGACCTGACAAACCAGAAAGTGAAATACACCCTAGATGCGTACGGAGGGCCAATCTGGACCATTACAGCCAATCAACAAAGAACACACTTAGCGGTCGGTTGTGAAGACGGAACTGTGAAACTGTTTGAGGTGAATGAAGACACGCTACAGTTTGAGAGAAATCTGGATAGGCAAAAAGGCCgcatcatctctctctcctggCACCCATCAGGCTCCAGAATAGCAGCTGGGATGATGGATATGATCCAGATATTTAACGTAGAGACGGGCCACTCTATACACAGGATGCTGCCTGACAAAGGTTTCGGGATATCCCTCACTAAGGAGTGTGTAATTTGGAGTGTGGTTTACCTCTCGGATGGGACGGTCATCAGTGGAGACTCCCTGGGACTGGTCAAATTTTGGGATGATCAGACTGGTACACAAATCAAAAGCCATGAAGTCACAAAATGTGATGTGCTGGCATTAGCAATCTCTGAGAATGAGGACAGCCTTGTTGCCGGGACGTCAGAAGGAACTGTGGTACAGTTCCAGTTCGTCTCTACCGTTTTTGGAAAGAATGACAAAGAATGGGTCAGAACCAGAACATTTAAGAACCACACACATGACATCAGAGCTGTGGCAGAGATCACGACAGCTGTGGTTTCAGGAGGTATGGACGCACACCTGGTCGTGAGACCTTTATTAGACAAGTTCGAAGAGAGGTCGGTGGCCTCTGCTTTGAGGAAGATTCACTTTCCACATAGGAGCCTGGTGTCCTGTGCCAAGAAGTCAGACCTGATGCTTTTCCGGTACCCTGGTCATCTGGAGCTCTGGAGACTGGGAGAGAGTGAAGGAAAAGGCTTGCCAGGAAgcagtttatttgtaaaaagaaatCCAGAGAAAGTGCTTCATTTAAAAGTGAAGGGTGAGGATCACATCCGCTGCAGTGCCGTGTCTCCCTGTGGAGAATGGATTGCTTACTCCACAGCCAATACTCTACGGCTCTTCAGGCTACACTGCAACAATAATAACATCAACATCACCAAGATATCCAAGCTACCAAAGGTTCTCAGCTCAGCCAGTCAGCTTTGCTTCTCTTCAGACTCCTCCCATTTGTTTTCCGCCTCCACACAGTCATCAGTGCACTTAGTTtctctcagccaatcaggatGCAAGCTTGTGGGCACCCTTAAACCTAAGTCAGGTTCCCATCAGGCCATTCACTTATTAGCTGCCAGTGAGGATGGCAAGTGGTTGGCCTCTGCAAACAGTGACCACGAGGTTCACGTCTATAACCTGCAGACACAAAAGGCTCATTGCACAGTTCCTGTATACAGTTCTGCTGTCACTGCCATGGGCATTCACCCAACAACAAACTGTCTGTTCATGATGTATGCAGATCAACAGATGTGCGAGTTTTCCATAGATCAGAAACAGTACACGGATTGGAGCAGAACGGTACAGGGGAAGGGCCTTCATAATTTCTGGTTGGAAAGAGACACACCGTGTCTCAATGTGACGTTCAATCCACAAAATCCATCCCATGTCATCCTGCATGATACTTACATGTTCTGCATCATTGACCAAAGCCTGCCATTGCCTAGTGATAAAGCTCCATTAATCAATCAGCTGACTCTGAAGAGCCTCCCAGAGGAGCAGAGGAAATCTCACAGCCATGCTTTTAAAATCTGCAAGACTTTTAAGgatATCCTGTGTGTCGAACTGATGTCAGATCAGTCTCTGGTGGTGGTTGAACGGCCTCTAGAGGATGTCGCCACTCAGTTGCCTGCACCCATCAAACAAAAGAAATTTGCCACATAAGCATAAACCTCTccatctgtatgtgtgtggtttttttgttgtgtttttttgtttttgtttgttttttatcaaGAGACTGCAAATTGTTCCCTGTTGCACCCAATGTAAAAACTGCTGTGACagtattaaaagaaatatttactgTA

Function

symbol description
utp4 Acts upstream of or within hepaticobiliary system process. Predicted to be part of 90S preribosome; small-subunit processome; and t-UTP complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and segmental plate. Human ortholog(s) of this gene implicated in cholestasis and primary biliary cholangitis. Orthologous to human UTP4 (UTP4 small subunit processome component).

NR:

description
U3 small nucleolar RNA-associated protein 4 homolog

GO: NA

KEGG:

id description
K14548 UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216813.1 True 2337 mRNA 0.46 17 23928290 23936310

Neighbor

gene id symbol gene type direction distance location
wfdc1 wfdc1,LOC107553961,LOC107749317,LOC107684670,LOC107583842,LOC107670154 coding upstream 702 23915929 ~ 23927588 (+)
si:dkey-246g23.4 si:dkey-246g23.4,LOC107553963,LOC107684669,LOC107749297,LOC107738435 coding upstream 16308 23899926 ~ 23911982 (+)
kcng4a kcng4a,kcng4,LOC107749318,LOC107553964,LOC107738382,LOC107684667,LOC107670163 coding upstream 36125 23859036 ~ 23892165 (+)
si:dkey-246g23.2 si:dkey-246g23.2,LOC107749300,LOC107553994,LOC107684666,LOC107670153,LOC107738383,LOC108415329 coding upstream 75015 23818053 ~ 23853275 (+)
zgc:173742 zgc:173742,LOC107553995,LOC107684664,LOC107749320,LOC108415671,LOC106560872 coding upstream 113550 23789393 ~ 23814740 (+)
vps9d1 vps9d1,LOC107749294,LOC107553982,LOC107670156,LOC107748773 coding downstream 690 23937000 ~ 23952211 (+)
spata2l LOC107670151,LOC107748780 coding downstream 21851 23958161 ~ 23961023 (+)
uri1 uri1,LOC107553985,LOC107684674,LOC107670159,LOC107583840 coding downstream 26718 23963028 ~ 23970059 (+)
LOC122362775 cdh13,LOC107722459,LOC107684661,LOC107738387 coding downstream 198103 24134413 ~ 24181542 (+)
cry1b cry1ab,LOC107672239,LOC107553944,LOC107583830 coding downstream 340972 24277282 ~ 24286775 (+)
G128725 NA non-coding upstream 141127 23785024 ~ 23787163 (+)
G128699 NA non-coding upstream 568733 23358451 ~ 23359557 (+)
G128696 NA non-coding upstream 591201 23335791 ~ 23337089 (+)
G128476 NA non-coding upstream 847980 23068310 ~ 23080310 (+)
G128475 NA non-coding upstream 861222 23066812 ~ 23067068 (+)
G128753 NA non-coding downstream 92179 24028489 ~ 24029817 (+)
G128770 NA non-coding downstream 120410 24056720 ~ 24063271 (+)
G128772 NA non-coding downstream 122043 24058353 ~ 24066103 (+)
G128803 NA non-coding downstream 360799 24297109 ~ 24297333 (+)
G128804 NA non-coding downstream 361299 24297609 ~ 24297845 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 191442 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1489611 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1516333 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3287231 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3327771 20589684 ~ 20600519 (+)
G128858 NA other downstream 513455 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 647535 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 1358433 25294743 ~ 25309740 (+)
mt2 NA other downstream 1410082 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1984957 25921267 ~ 26174156 (+)

Expression


Co-expression Network